Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0602
(795 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ... 28 1.3
SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ... 27 2.3
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa... 27 2.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 3.1
SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit ... 27 4.1
SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr 2||... 26 5.4
SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces ... 26 7.1
SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual 26 7.1
SPBC609.04 |caf5||spermine family transmembrane transporter Caf5... 25 9.4
SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter M... 25 9.4
>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1955
Score = 28.3 bits (60), Expect = 1.3
Identities = 12/40 (30%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Frame = -2
Query: 284 WWRSWGRYWLV-YYFAPDTLNWESLEVGYSEFLQWALSGD 168
WW S + + F P +W V Y EF++W G+
Sbjct: 1537 WWVSIMALCVAPFLFNPHQFDWNDFFVDYREFIRWLSRGN 1576
>SPBC947.09 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 261
Score = 27.5 bits (58), Expect = 2.3
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = -1
Query: 672 QFLIINDTVAHKEQVAMREMNQLVNTEDSAWPIIQN 565
+FL +D +A +++ E L N +D W I+QN
Sbjct: 76 EFLSYDDHIASGPELSKAEKYVLENKDDMFWRIVQN 111
>SPBC776.12c |hsk1||serine/threonine protein kinase
Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 507
Score = 27.5 bits (58), Expect = 2.3
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -1
Query: 582 WPIIQNWLKDATNHTELLPVNKDLAKPHFI 493
W I LK+++ E +PVN+D KP ++
Sbjct: 97 WDIQSEVLKESSFGKEKIPVNEDSRKPKYV 126
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 27.1 bits (57), Expect = 3.1
Identities = 13/44 (29%), Positives = 24/44 (54%)
Frame = +1
Query: 364 NLLDLVATGGDQILLCVTNHYQSADLRSHRQAHPSVILLSPVID 495
++ ++ A GD+I L NH + L + R+ P ++ SP+ D
Sbjct: 33 DIFEIRAQNGDEIAL-QHNHSSTGKLHAKREKEPVYLMPSPLTD 75
>SPAC24C9.07c |bgs2|meu21, pgs2|1,3-beta-glucan synthase subunit
Bgs2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1894
Score = 26.6 bits (56), Expect = 4.1
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = -2
Query: 251 YYFAPDTLNWESLEVGYSEFLQWALSGD 168
+ F P +W V Y EF++W G+
Sbjct: 1523 FIFNPHQFSWTDFFVDYREFIRWLSRGN 1550
>SPBC29A3.17 |gef3||RhoGEF Gef3|Schizosaccharomyces pombe|chr
2|||Manual
Length = 525
Score = 26.2 bits (55), Expect = 5.4
Identities = 17/76 (22%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Frame = -1
Query: 732 MDKVIFYSNIRNLIFKKCSIQFL---IINDTVAHKEQVAMREMNQLVNTEDSAWPIIQNW 562
+ + + Y + N +++ S+ + ++ HK ++A + MN+L D II
Sbjct: 223 VQRFLKYPLLLNQLYRSASLGIISDYVLLGEACHKSEIASQRMNELKRRRD----IIITA 278
Query: 561 LKDATNHTELLPVNKD 514
L +N E+L ++ D
Sbjct: 279 LDSVSNSQEVLLLSTD 294
>SPAC637.04 |||Cargo-transport protein Ypp1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 862
Score = 25.8 bits (54), Expect = 7.1
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -2
Query: 104 ATEAFTFYPFLWVQSEEARTRK 39
A+EAF Y FL V+S E RK
Sbjct: 361 ASEAFEIYKFLCVKSHERLARK 382
>SPCC622.05 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
Length = 115
Score = 25.8 bits (54), Expect = 7.1
Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 3/39 (7%)
Frame = -1
Query: 336 CGLYPSLTMSQ---G*FLLLMVAILGKILAGLLFCARYA 229
C LYP L SQ FL + ++LG +++ +FC YA
Sbjct: 36 CFLYPKLFDSQRSPSPFLRWLFSVLGVLMSMDVFCILYA 74
>SPBC609.04 |caf5||spermine family transmembrane transporter
Caf5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 9.4
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = -1
Query: 465 WVRLSMAPEVC*LIMVSYA*QDLVTPGCHEIQ*VGH 358
W +L + ++C L Y + TPG E+Q H
Sbjct: 80 WAKLVVTFDICFLTFAVYVGSAIFTPGISEMQETMH 115
>SPAC17C9.16c ||SPAC9E9.16|MFS family transmembrane transporter
Mfs1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 531
Score = 25.4 bits (53), Expect = 9.4
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = -1
Query: 465 WVRLSMAPEVC*LIMVSYA*QDLVTPGCHEIQ*VGH 358
W +L + +VC L Y + TPG EI+ H
Sbjct: 80 WAKLVVTFDVCFLTFAVYMGSAIFTPGIQEIRETMH 115
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,642,781
Number of Sequences: 5004
Number of extensions: 82493
Number of successful extensions: 215
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 387388442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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