Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0602
(795 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0901 - 29247518-29247634,29248990-29250273 32 0.46
12_01_0171 - 1268803-1269500,1271491-1271567,1271941-1272065,127... 31 1.4
11_01_0169 - 1365984-1366681,1368669-1368745,1369133-1369257,136... 30 1.8
02_04_0317 + 21996324-21996681,21996833-21996859,21997299-219982... 30 1.8
06_01_0179 - 1388602-1389572,1390060-1390129,1390346-1390439,139... 29 4.3
06_01_1168 - 9949128-9950621 29 5.6
01_06_1109 - 34576866-34577043,34577774-34577845,34577934-345780... 28 7.4
10_08_0657 - 19632363-19632494,19632587-19632864,19632964-196330... 28 9.8
10_01_0007 - 79867-79950,80258-80303,80409-80641,80765-80836,811... 28 9.8
>04_04_0901 - 29247518-29247634,29248990-29250273
Length = 466
Score = 32.3 bits (70), Expect = 0.46
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Frame = +3
Query: 237 WRKIINQPVSSPRSPPLRAKITPATSS-AMGKARTPANS 350
W + +N ++P SPPL A TP ++ A+G R+P+NS
Sbjct: 204 WEEQLNSITAAP-SPPLTAATTPNNNNNAVGMTRSPSNS 241
>12_01_0171 -
1268803-1269500,1271491-1271567,1271941-1272065,
1272146-1272234,1272851-1272936,1273509-1273765
Length = 443
Score = 30.7 bits (66), Expect = 1.4
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 264 SSPRSPPLRAKITPATSSAMGKARTPANSGRCVQLTGSRGNRG 392
SSP S P + + P T + GKA+ P + V S G G
Sbjct: 32 SSPMSMPCKRRARPRTEKSTGKAKRPKKESKEVADPSSNGGGG 74
>11_01_0169 -
1365984-1366681,1368669-1368745,1369133-1369257,
1369338-1369426,1370041-1370126,1370705-1370970
Length = 446
Score = 30.3 bits (65), Expect = 1.8
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 264 SSPRSPPLRAKITPATSSAMGKARTPANSGRCVQLTGSRGNRG 392
SSP S P + + P T + GKA+ P + V S G G
Sbjct: 32 SSPMSMPCKRRARPRTDKSTGKAKRPKKESKEVVDPSSNGGGG 74
>02_04_0317 +
21996324-21996681,21996833-21996859,21997299-21998227,
21998317-21999162
Length = 719
Score = 30.3 bits (65), Expect = 1.8
Identities = 13/40 (32%), Positives = 25/40 (62%)
Frame = -2
Query: 125 EDVIKLSATEAFTFYPFLWVQSEEARTRKVISLTELWEMQ 6
E V++ + E + YP V+ + A+TR +L+E+WE++
Sbjct: 474 ESVLQAAGIELGSNYPLPIVELDAAKTRLQDALSEMWELE 513
>06_01_0179 -
1388602-1389572,1390060-1390129,1390346-1390439,
1390587-1390687,1391152-1391220,1391328-1391482,
1392193-1392241,1392611-1392739,1392825-1393580,
1394711-1394902
Length = 861
Score = 29.1 bits (62), Expect = 4.3
Identities = 16/57 (28%), Positives = 23/57 (40%)
Frame = +3
Query: 189 KKLRISNFQTFPIQRIWRKIINQPVSSPRSPPLRAKITPATSSAMGKARTPANSGRC 359
K +I Q + + + +I V PR P LR + G RTP +G C
Sbjct: 244 KLAQIQQQQQHQMLQPFSQIQQSQVGIPRQPQLRPPLAQPGMQLAGPVRTPVENGLC 300
>06_01_1168 - 9949128-9950621
Length = 497
Score = 28.7 bits (61), Expect = 5.6
Identities = 21/44 (47%), Positives = 23/44 (52%), Gaps = 4/44 (9%)
Frame = -3
Query: 373 PVSWTQRPEFAGVRALPIADDVAGV----IFALNGGDLGEDTGW 254
PVSW GV A P ADDVAGV + A +GG G GW
Sbjct: 417 PVSW------GGVAAPPTADDVAGVLEATVLAADGG--GWARGW 452
>01_06_1109 -
34576866-34577043,34577774-34577845,34577934-34578079,
34578337-34578406,34578516-34578573,34578658-34578751,
34579264-34579347,34579958-34580341
Length = 361
Score = 28.3 bits (60), Expect = 7.4
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +3
Query: 255 QPVSSPRSPPLRAKITPATSSAMGKARTPANSGRCVQL 368
+P SPR PLRA++ TS + P+ S R + L
Sbjct: 38 EPEESPRLGPLRARLLVLTSHRLIFLHEPSRSARALPL 75
>10_08_0657 -
19632363-19632494,19632587-19632864,19632964-19633084,
19634337-19634438,19634510-19634622,19635000-19635373,
19635663-19635688,19636048-19636261,19636343-19636460,
19636930-19637017,19637113-19637280,19637559-19637631,
19637796-19637902,19638057-19638094,19638190-19638305,
19638579-19638698,19639498-19640000
Length = 896
Score = 27.9 bits (59), Expect = 9.8
Identities = 12/44 (27%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = -1
Query: 657 NDTVAHKEQVAMREM--NQLVNTEDSAWPIIQNWLKDATNHTEL 532
++ A K A +E +Q+ +T ++ W W++D+T+ T L
Sbjct: 260 DEEFASKLSTAAKEKFYHQVASTAETGWDFSSRWMRDSTDMTTL 303
>10_01_0007 -
79867-79950,80258-80303,80409-80641,80765-80836,
81135-81230,81506-81607,81684-82349
Length = 432
Score = 27.9 bits (59), Expect = 9.8
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 3/83 (3%)
Frame = -3
Query: 472 SPMGALVYGSGGLLIDNG*LRIAGSGHPRLPR---DPVSWTQRPEFAGVRALPIADDVAG 302
S LVY G L D + G GH +LPR P SWT+R + D G
Sbjct: 100 SAFSGLVYEVGPLTFD-----VHGHGHGQLPRLLYKPESWTKRTN------VIFLDSPVG 148
Query: 301 VIFALNGGDLGEDTGWFIILRQI 233
F+ D G TG I + I
Sbjct: 149 TGFSYADTDAGFRTGDTIAVHHI 171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,564,156
Number of Sequences: 37544
Number of extensions: 550305
Number of successful extensions: 1469
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1423
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1467
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2150667972
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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