Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0602
         (795 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical ...    31   0.72 
U13019-12|AAC24448.1|  316|Caenorhabditis elegans Serpentine rec...    31   1.3  
Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical pr...    29   3.8  
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ...    28   6.7  
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ...    28   6.7  
AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical ...    28   8.9  

>AC024849-3|AAK68547.1|  327|Caenorhabditis elegans Hypothetical
           protein Y67D8B.2 protein.
          Length = 327

 Score = 31.5 bits (68), Expect = 0.72
 Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
 Frame = +2

Query: 533 SSVWFVASFNQF-WIIGQAESSVFTN*FISRIATCSLCATVSFMMRNCMEHFLN 691
           S++WF    + F W+ G +E    ++    R+A C LC  V F +     HF N
Sbjct: 105 SAMWFRLVAHYFEWLAGISELQYLSDQDKLRLAVCQLCKVVCFSVVYANYHFKN 158


>U13019-12|AAC24448.1|  316|Caenorhabditis elegans Serpentine
           receptor, class g (gamma)protein 8 protein.
          Length = 316

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = -2

Query: 272 WGRYWLVYYFAPDTLNWESLEVGYSEFLQWALSGDLDTFYENVR 141
           WG++WL Y   P    W+ L VG S  +    SG L T   N++
Sbjct: 259 WGKHWLAYLVQP--FAWDVLNVG-SPLVMIFASGQLRTHAFNIK 299


>Z71186-8|CAA94917.2| 1322|Caenorhabditis elegans Hypothetical
           protein F23D12.2 protein.
          Length = 1322

 Score = 29.1 bits (62), Expect = 3.8
 Identities = 16/39 (41%), Positives = 22/39 (56%)
 Frame = +3

Query: 225 IQRIWRKIINQPVSSPRSPPLRAKITPATSSAMGKARTP 341
           I+ I     NQP S+  +P    K+ PA +  MGK+RTP
Sbjct: 162 IEEIKSSSSNQPASTFPTP---VKLNPAIARIMGKSRTP 197


>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 6, isoform a protein.
          Length = 1724

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 657 NDTVAHKEQVAMREMNQLV-NTEDSAWPIIQNWLKDATNHTE-LLPVNKDLAKPHFI 493
           ND   H  ++ M+ +  L+ N+ D  W ++   ++  TNH + L+   KD  +   +
Sbjct: 719 NDVTEHARKLIMKVLTPLLENSSDLTWTLLDT-IESVTNHRQYLMSTLKDAVREKLV 774


>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
           chromosome bindingprotein protein 6, isoform b protein.
          Length = 1758

 Score = 28.3 bits (60), Expect = 6.7
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
 Frame = -1

Query: 657 NDTVAHKEQVAMREMNQLV-NTEDSAWPIIQNWLKDATNHTE-LLPVNKDLAKPHFI 493
           ND   H  ++ M+ +  L+ N+ D  W ++   ++  TNH + L+   KD  +   +
Sbjct: 719 NDVTEHARKLIMKVLTPLLENSSDLTWTLLDT-IESVTNHRQYLMSTLKDAVREKLV 774


>AF025450-2|AAB70936.3|  350|Caenorhabditis elegans Hypothetical
           protein C41H7.5 protein.
          Length = 350

 Score = 27.9 bits (59), Expect = 8.9
 Identities = 13/26 (50%), Positives = 18/26 (69%)
 Frame = +3

Query: 525 PVRVRYGLWRLLTSSGLLARLNLQYL 602
           PVR R  L RLL+++G + R NL Y+
Sbjct: 100 PVRCRDILRRLLSATGFMGRRNLPYM 125


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,956,299
Number of Sequences: 27780
Number of extensions: 456796
Number of successful extensions: 1180
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1180
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1935274832
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)