Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0602
         (795 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       28   0.087
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      23   4.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   7.5  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              22   7.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    21   10.0 

>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 28.3 bits (60), Expect = 0.087
 Identities = 9/28 (32%), Positives = 19/28 (67%)
 Frame = -1

Query: 573 IQNWLKDATNHTELLPVNKDLAKPHFIN 490
           ++NW  + +N+TELLP++    + H ++
Sbjct: 13  LENWRVNNSNYTELLPIDMRFNEGHIVS 40


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.6 bits (46), Expect = 4.3
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3

Query: 82  TLSYGYKVKKQEQEKLFRLLNSGKCSI 2
           TLS    +K+ ++++ F+ LNS  C++
Sbjct: 380 TLSTKLTLKRHKEQQHFQPLNSAVCAL 406


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 511  SETALYQLQVTTKSPMGALVYGSGG 437
            SET L+ L+  T   M  L + SGG
Sbjct: 1139 SETILHGLKKYTNYSMQVLAFTSGG 1163


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +2

Query: 539 VWFVASFNQFWII 577
           +W+V S +Q WI+
Sbjct: 595 LWYVPSLDQVWIL 607


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 21.4 bits (43), Expect = 10.0
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = -2

Query: 260 WLVYYFAPDTLNWESLEVGYSEFL 189
           W  Y F P  L W  +   + E L
Sbjct: 563 WFDYAFIPGNLKWLDIHGNFIESL 586


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 245,039
Number of Sequences: 438
Number of extensions: 5804
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25125039
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)