Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0602
         (795 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g48510.1 68416.m05295 expressed protein                             29   3.6  
At1g04300.1 68414.m00421 meprin and TRAF homology domain-contain...    29   3.6  
At3g58120.1 68416.m06481 bZIP transcription factor family protei...    28   8.2  

>At3g48510.1 68416.m05295 expressed protein
          Length = 294

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 15/44 (34%), Positives = 21/44 (47%), Gaps = 1/44 (2%)
 Frame = +3

Query: 555 LLTSSGLLARLNLQYLLTDSFHASLLAPC-VLRCHL**GIVWNI 683
           +LTS G   R+ LQY   +    S+  PC V R  +  G  W +
Sbjct: 243 MLTSPGFTCRMKLQYTCQNRERGSVTVPCDVWRMDVGGGFAWRL 286


>At1g04300.1 68414.m00421 meprin and TRAF homology domain-containing
           protein / MATH domain-containing protein weak similarity
           to ubiquitin-specific protease 12 [Arabidopsis thaliana]
           GI:11993471;contains Pfam PF00917: Meprin And
           TRAF-Homology (MATH) domain
          Length = 1052

 Score = 29.1 bits (62), Expect = 3.6
 Identities = 9/23 (39%), Positives = 16/23 (69%)
 Frame = -1

Query: 648 VAHKEQVAMREMNQLVNTEDSAW 580
           VAH+E +A++   +L+  E+ AW
Sbjct: 384 VAHQEAIALKRQEELIREEEEAW 406


>At3g58120.1 68416.m06481 bZIP transcription factor family protein
           contains Pfam profile: PF00170 bZIP transcription factor
           ;supported by cDNA gi|15100054|gb|AF401300.1|AF401300
          Length = 329

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/38 (34%), Positives = 16/38 (42%)
 Frame = +2

Query: 146 HFHRRYLNHRIMPTEETQNIQLPDFPNSAYLAQNNKPA 259
           H H   +N  + PT  + N   P   NS     NNK A
Sbjct: 107 HHHHHSINGNVGPTRSSSNTSTPSDHNSLSDDDNNKEA 144


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,991,475
Number of Sequences: 28952
Number of extensions: 431931
Number of successful extensions: 1119
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1089
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1119
length of database: 12,070,560
effective HSP length: 80
effective length of database: 9,754,400
effective search space used: 1794809600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)