Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0601
(671 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 179 4e-46
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 102 5e-23
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 98 1e-21
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 97 2e-21
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 63 3e-11
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 62 9e-11
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 52 1e-07
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 38 0.001
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 36 0.004
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.086
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 30 0.35
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 29 0.81
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 27 1.9
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 27 2.5
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 3.3
SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyc... 27 3.3
SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha Ef... 26 4.3
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 4.3
SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha Ef... 26 4.3
SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|... 26 4.3
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M... 26 4.3
SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha Ef... 26 4.3
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 26 4.3
SPAC20G8.05c |cdc15||cell division control protein Cdc15|Schizos... 26 5.7
SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces ... 25 7.5
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 25 7.5
SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces pombe... 25 7.5
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|... 25 9.9
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 179 bits (435), Expect = 4e-46
Identities = 80/91 (87%), Positives = 84/91 (92%)
Frame = +1
Query: 238 GTEGLFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTE 417
G + +VGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVAPEEHP LLTE
Sbjct: 48 GQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVAPEEHPCLLTE 107
Query: 418 APLNPKANREKMTQIMFETFNTPAMYVAIQA 510
APLNPK+NREKMTQI+FETFN PA YVAIQA
Sbjct: 108 APLNPKSNREKMTQIIFETFNAPAFYVAIQA 138
Score = 107 bits (257), Expect = 1e-24
Identities = 50/55 (90%), Positives = 53/55 (96%)
Frame = +3
Query: 507 SVLSLYASGRTNGIVLDSGDGVSHTVPIYEGYALPQAILRLDLAGRDLTDYLMKI 671
+VLSLYASGRT GIVLDSGDGV+HTVPIYEGYALP AI+RLDLAGRDLTDYLMKI
Sbjct: 138 AVLSLYASGRTTGIVLDSGDGVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKI 192
Score = 106 bits (254), Expect = 3e-24
Identities = 46/51 (90%), Positives = 50/51 (98%)
Frame = +2
Query: 101 DEEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKDS 253
+EE+AALV+DNGSGMCKAGFAGDDAPRAVFPSIVGRPRH G+MVGMGQKDS
Sbjct: 2 EEEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHHGIMVGMGQKDS 52
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 102 bits (244), Expect = 5e-23
Identities = 42/96 (43%), Positives = 68/96 (70%)
Frame = +1
Query: 223 RDGRYGTEGLFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHP 402
+ G + + VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P
Sbjct: 43 KTGNVQIKDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRK 102
Query: 403 VLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQA 510
+LLTE P+NP ANREKM + MFE + +YVAIQA
Sbjct: 103 ILLTEPPMNPVANREKMCETMFERYGFGGVYVAIQA 138
Score = 70.9 bits (166), Expect = 2e-13
Identities = 31/55 (56%), Positives = 42/55 (76%)
Frame = +3
Query: 507 SVLSLYASGRTNGIVLDSGDGVSHTVPIYEGYALPQAILRLDLAGRDLTDYLMKI 671
+VLSLYA G ++G+V+DSGDGV+H VP+YE L + RLD+AGRD T YL+ +
Sbjct: 138 AVLSLYAQGLSSGVVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRYLISL 192
Score = 48.0 bits (109), Expect = 1e-06
Identities = 21/35 (60%), Positives = 26/35 (74%)
Frame = +2
Query: 107 EVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVGRP 211
E A +V+DNG+G K G+A D+ PR FPSIVGRP
Sbjct: 2 ESAPIVLDNGTGFVKVGYAKDNFPRFQFPSIVGRP 36
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 97.9 bits (233), Expect = 1e-21
Identities = 42/87 (48%), Positives = 56/87 (64%), Gaps = 1/87 (1%)
Frame = +1
Query: 253 FVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLN 429
F+G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE PLN
Sbjct: 75 FIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPPLN 134
Query: 430 PKANREKMTQIMFETFNTPAMYVAIQA 510
P NRE +IMFE+FN +Y+A+QA
Sbjct: 135 PPENRENTAEIMFESFNCAGLYIAVQA 161
Score = 50.8 bits (116), Expect = 2e-07
Identities = 20/43 (46%), Positives = 31/43 (72%)
Frame = +3
Query: 543 GIVLDSGDGVSHTVPIYEGYALPQAILRLDLAGRDLTDYLMKI 671
G V+DSGDGV+H +P+ EGY + +I + LAGRD+T ++ +
Sbjct: 181 GTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVTYFVQSL 223
Score = 40.7 bits (91), Expect = 2e-04
Identities = 14/28 (50%), Positives = 23/28 (82%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIV 202
+++DNG+G K G+AG+DAP VFP+++
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPTVI 35
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 97.1 bits (231), Expect = 2e-21
Identities = 42/87 (48%), Positives = 61/87 (70%), Gaps = 1/87 (1%)
Frame = +1
Query: 250 LFVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYN-ELRVAPEEHPVLLTEAPL 426
+FVG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + + +L PEEHP+LLTE PL
Sbjct: 56 MFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPL 115
Query: 427 NPKANREKMTQIMFETFNTPAMYVAIQ 507
N+EK+ + +ET N PA+ ++Q
Sbjct: 116 ANIRNKEKIAEYFYETLNVPALSFSLQ 142
Score = 75.4 bits (177), Expect = 7e-15
Identities = 31/51 (60%), Positives = 44/51 (86%)
Frame = +3
Query: 510 VLSLYASGRTNGIVLDSGDGVSHTVPIYEGYALPQAILRLDLAGRDLTDYL 662
VL+LYAS RT GIVL+ GDG++H+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 144 VLALYASARTTGIVLECGDGLTHSVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
Score = 58.8 bits (136), Expect = 7e-10
Identities = 25/44 (56%), Positives = 32/44 (72%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPRHQGVMVGMGQKD 250
+ +DNGSG KAGFAGDD P+ +FP+ VGR +H+ VM QKD
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKD 55
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 63.3 bits (147), Expect = 3e-11
Identities = 29/73 (39%), Positives = 41/73 (56%)
Frame = +1
Query: 289 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 468
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 469 ETFNTPAMYVAIQ 507
E+ PA Y+A Q
Sbjct: 123 ESLRCPATYLAKQ 135
Score = 40.3 bits (90), Expect = 2e-04
Identities = 16/34 (47%), Positives = 24/34 (70%)
Frame = +2
Query: 104 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 205
+EV+A+V+D GS + GF+G+D P+ V PS G
Sbjct: 9 DEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCG 42
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/47 (27%), Positives = 22/47 (46%)
Frame = +3
Query: 522 YASGRTNGIVLDSGDGVSHTVPIYEGYALPQAILRLDLAGRDLTDYL 662
+ASG+ ++D G S IY+G+ L + +G + D L
Sbjct: 141 FASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNAINDIL 187
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 61.7 bits (143), Expect = 9e-11
Identities = 30/95 (31%), Positives = 53/95 (55%), Gaps = 1/95 (1%)
Frame = +1
Query: 223 RDGRYGTEGLFVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEH 399
RD + VG++ + G ++ + P E +++NWD ME++ +TF +L + EH
Sbjct: 58 RDRKLSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEH 116
Query: 400 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAI 504
P+ +TE NP R MT+++FE +N P++ I
Sbjct: 117 PICMTEPLANPTYVRSTMTELLFELYNAPSVAYGI 151
Score = 35.9 bits (79), Expect = 0.005
Identities = 15/32 (46%), Positives = 22/32 (68%)
Frame = +2
Query: 119 LVVDNGSGMCKAGFAGDDAPRAVFPSIVGRPR 214
LV+DNGS +AG+ G+ P+ VF ++V R R
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVFDNLVSRYR 58
Score = 35.1 bits (77), Expect = 0.009
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +3
Query: 537 TNGIVLDSGDGVSHTVPIYEGYALPQAILRLDLAGRDLTDYLMKI 671
++GIVL+ G+ SH +P+ G + R+ G + YL+K+
Sbjct: 165 SSGIVLNLGNAASHVIPVLNGERILSEAKRISWGGSQSSSYLLKL 209
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/88 (29%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Frame = +1
Query: 253 FVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPL 426
+V DE Q I + +K +GI+ +W+ W +L+V P E+ +++TE
Sbjct: 52 YVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQVNPTEYAMMITEPSW 111
Query: 427 NPKANREKMTQIMFETFNTPAMYVAIQA 510
NP++ R+++ + FE + PA Y+ QA
Sbjct: 112 NPQSVRQQIMEAAFEQLHVPAFYLTKQA 139
Score = 36.7 bits (81), Expect = 0.003
Identities = 14/34 (41%), Positives = 23/34 (67%)
Frame = +2
Query: 104 EEVAALVVDNGSGMCKAGFAGDDAPRAVFPSIVG 205
EE+ +LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 38.3 bits (85), Expect = 0.001
Identities = 15/42 (35%), Positives = 28/42 (66%)
Frame = +3
Query: 546 IVLDSGDGVSHTVPIYEGYALPQAILRLDLAGRDLTDYLMKI 671
+V+DSG +H +P+ + QA+ R+D+ G+ LT+YL ++
Sbjct: 159 LVIDSGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEV 200
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 36.3 bits (80), Expect = 0.004
Identities = 18/54 (33%), Positives = 30/54 (55%)
Frame = +3
Query: 510 VLSLYASGRTNGIVLDSGDGVSHTVPIYEGYALPQAILRLDLAGRDLTDYLMKI 671
++ LYA G +G+V+D G + PI +G + A +L L GR +T +L +
Sbjct: 185 LMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYMTQHLQNL 238
Score = 34.7 bits (76), Expect = 0.012
Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 4/72 (5%)
Frame = +1
Query: 304 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 471
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 472 TFNTPAMYVAIQ 507
P +A +
Sbjct: 172 ECQVPGFTIAYE 183
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.086
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +1
Query: 364 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 507
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 29.9 bits (64), Expect = 0.35
Identities = 19/66 (28%), Positives = 29/66 (43%)
Frame = -3
Query: 336 IPVSDDSVFDGVFEGQDTSFALCLISYKESFCPIPTITP*WRGLPTIEGNTARGASSPAK 157
+P + +V +TSFAL S S PT + P +E + +S+PA
Sbjct: 63 LPTQEAAVETNASASHETSFALPTTSPAASLSISPTKSAAVSSEPNVEADVKSLSSTPAA 122
Query: 156 PALHIP 139
P L+ P
Sbjct: 123 PQLNSP 128
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 28.7 bits (61), Expect = 0.81
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +3
Query: 507 SVLSLYASGRTNGIVLDSGDGVSHTVPIYEGYALPQAILRLDLAGRDLTDYLMKI 671
S+ + + +G + V+D G + + EG +P + ++++ G D+T MK+
Sbjct: 281 SLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNSRIKINYGGDDITLLFMKL 335
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 27.5 bits (58), Expect = 1.9
Identities = 28/99 (28%), Positives = 38/99 (38%), Gaps = 3/99 (3%)
Frame = +1
Query: 364 FYNE--LRVAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQACSRCTRPVV 537
FY+E L++ E + ANR K TP+ R P
Sbjct: 453 FYDEPLLKICQEATQPKSLYRSASAAANRPKTATTTDSVNRTPSQR------GRVAVPST 506
Query: 538 PTVSCWTPATVSP-TPCPSTRDTHSPKPSCVWT*PVATS 651
P+V + A SP TP P ++T +P S P ATS
Sbjct: 507 PSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATS 545
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 27.1 bits (57), Expect = 2.5
Identities = 14/27 (51%), Positives = 14/27 (51%)
Frame = +1
Query: 523 TRPVVPTVSCWTPATVSPTPCPSTRDT 603
T P T S TPA V P P PST T
Sbjct: 833 TSPYATTSSHITPADVHPLPPPSTSTT 859
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 26.6 bits (56), Expect = 3.3
Identities = 15/45 (33%), Positives = 18/45 (40%)
Frame = -3
Query: 234 PTITP*WRGLPTIEGNTARGASSPAKPALHIPEPLSTTNAATSSS 100
PT+ P P N S P PL+TTN TS+S
Sbjct: 411 PTVPPTSSSTPLTTTNCTTSTSVPYTSTPVTSTPLATTNCTTSTS 455
>SPAC343.16 |lys2||homoaconitate hydratase Lys2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 721
Score = 26.6 bits (56), Expect = 3.3
Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 2/53 (3%)
Frame = +3
Query: 459 DH-VRNIQHARHVRRHPSVLSLYASGRTNGI-VLDSGDGVSHTVPIYEGYALP 611
DH V+N A ++R++ ++ S +A G+ GI +G G+ H + + +GYA+P
Sbjct: 126 DHDVQNKSEA-NLRKYKNIES-FAKGQ--GIDFYPAGRGIGHQIMVEQGYAMP 174
>SPAC23A1.10 |ef1a-b||translation elongation factor EF-1 alpha
Ef1a-b |Schizosaccharomyces pombe|chr 1|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -1
Query: 608 ECVSLVDGHGVGDTVAGVQHDTVGTTGRVQREHAWMATYMAGV 480
+C L+ G G G+ AG+ D G T REHA +A Y GV
Sbjct: 110 DCAILIIGGGTGEFEAGISKD--GQT----REHALLA-YTLGV 145
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 4.3
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +1
Query: 406 LLTEAPLNPKANREKMTQIMFETFN 480
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPCC794.09c |ef1a-a||translation elongation factor EF-1 alpha
Ef1a-a |Schizosaccharomyces pombe|chr 3|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -1
Query: 608 ECVSLVDGHGVGDTVAGVQHDTVGTTGRVQREHAWMATYMAGV 480
+C L+ G G G+ AG+ D G T REHA +A Y GV
Sbjct: 110 DCAVLIIGGGTGEFEAGISKD--GQT----REHALLA-YTLGV 145
>SPAC6G10.10c |||human hmmtag2 homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 194
Score = 26.2 bits (55), Expect = 4.3
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = +2
Query: 473 HST-RPPCTSPSKR-ALAVRVRSYQRYRAGLRRRCLPHRAHL 592
HST R TSP+ R + R+ +R G RR P+R HL
Sbjct: 121 HSTSRSRSTSPANRHRRKEKERTRSNHRHGSHRRHEPYRTHL 162
>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 4.3
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = -3
Query: 240 PIPTITP*WRGLPTIEGNTARGASSPAKPAL 148
P+PT P LPT NT + P+ PAL
Sbjct: 74 PVPTGAP---SLPTSSNNTQQAEERPSMPAL 101
>SPBC839.15c |ef1a-c||translation elongation factor EF-1 alpha
Ef1a-c |Schizosaccharomyces pombe|chr 2|||Manual
Length = 460
Score = 26.2 bits (55), Expect = 4.3
Identities = 18/43 (41%), Positives = 23/43 (53%)
Frame = -1
Query: 608 ECVSLVDGHGVGDTVAGVQHDTVGTTGRVQREHAWMATYMAGV 480
+C L+ G G G+ AG+ D G T REHA +A Y GV
Sbjct: 110 DCAILIIGGGTGEFEAGISKD--GQT----REHALLA-YTLGV 145
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 26.2 bits (55), Expect = 4.3
Identities = 12/31 (38%), Positives = 14/31 (45%)
Frame = +1
Query: 529 PVVPTVSCWTPATVSPTPCPSTRDTHSPKPS 621
P VP S P+ P P PS+ P PS
Sbjct: 1050 PPVPKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
>SPAC20G8.05c |cdc15||cell division control protein
Cdc15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 927
Score = 25.8 bits (54), Expect = 5.7
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = -1
Query: 257 TKSPSVPYRPSRPDGGAFPRSRGTR 183
+K+PS PY SRP A S TR
Sbjct: 311 SKAPSYPYSSSRPSASASLASSPTR 335
>SPCC757.05c |||acetylornithine deacetylase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 400
Score = 25.4 bits (53), Expect = 7.5
Identities = 10/25 (40%), Positives = 14/25 (56%)
Frame = -1
Query: 512 HAWMATYMAGVLNVSNMIWVIFSLL 438
H WM+ +AG LN + W S+L
Sbjct: 17 HLWMSPVLAGPLNFGYLSWGQHSIL 41
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 25.4 bits (53), Expect = 7.5
Identities = 12/27 (44%), Positives = 15/27 (55%)
Frame = +1
Query: 514 SRCTRPVVPTVSCWTPATVSPTPCPST 594
SR T+P+ S +P VSP PST
Sbjct: 264 SRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC1E8.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 317
Score = 25.4 bits (53), Expect = 7.5
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +1
Query: 460 IMFETFNTPAMYVAIQACSRCTRPVVPTVSCWTPATVSPT 579
+ F+ T + Y +QACS CT + T S T+S T
Sbjct: 94 LSFDGGETYSQYFTLQACSTCT---ISTSSLSYSGTISST 130
>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
2|||Manual
Length = 743
Score = 25.0 bits (52), Expect = 9.9
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +1
Query: 556 TPATVSPTPCPSTRDTHSPK 615
TP + T P+T DTH PK
Sbjct: 285 TPQMQNTTSQPTTHDTHPPK 304
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,008,153
Number of Sequences: 5004
Number of extensions: 68070
Number of successful extensions: 248
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 209
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 245
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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