Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0599
(675 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.14 |rec8||meiotic cohesin complex subunit Rec8|Schizos... 27 1.9
SPBC36.01c |||spermidine family transporter |Schizosaccharomyces... 26 4.3
SPBC947.06c |||spermidine family transporter |Schizosaccharomyce... 26 5.7
SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomy... 26 5.7
SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual 25 7.6
SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.6
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 7.6
SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr 3|||... 25 10.0
SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr 1... 25 10.0
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa... 25 10.0
>SPBC29A10.14 |rec8||meiotic cohesin complex subunit
Rec8|Schizosaccharomyces pombe|chr 2|||Manual
Length = 561
Score = 27.5 bits (58), Expect = 1.9
Identities = 20/57 (35%), Positives = 30/57 (52%), Gaps = 3/57 (5%)
Frame = -1
Query: 447 KHNHNTSLARKR*NMPSHSDQLIKHTSQNFSSSNNCNTNIY---RLFNTHIIFNFIF 286
K N N S+ +P + LI +TSQN+S NN ++ +Y R F+T +F F
Sbjct: 154 KENPNISVLE---TLPDSTSYLI-NTSQNYSLRNNVSSFVYEDSRAFSTEEPLDFEF 206
>SPBC36.01c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 580
Score = 26.2 bits (55), Expect = 4.3
Identities = 9/33 (27%), Positives = 19/33 (57%)
Frame = -2
Query: 338 IQIYTDYLTHILYLILFSSTYVFTFTNHYPINV 240
+ +Y ++ I+YL+L + +F H+P+ V
Sbjct: 375 VSLYCSFVYAIIYLLLEAYPVIFQEGRHFPLGV 407
>SPBC947.06c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 498
Score = 25.8 bits (54), Expect = 5.7
Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
Frame = -2
Query: 356 AVPITA-IQIYTDYLTHILYLILFSSTYVFTFTNHY 252
A PI I ++ Y+ ILYL+L + Y F T ++
Sbjct: 286 ATPIVFFIAMFASYVYGILYLVLTTIPYTFGMTKNW 321
>SPAC6F6.08c |cdc16|bub2|two-component GAP Cdc16|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 299
Score = 25.8 bits (54), Expect = 5.7
Identities = 10/21 (47%), Positives = 16/21 (76%)
Frame = +2
Query: 290 IKLNIICVLNNLYIFVLQLLE 352
I LNI+CV+ ++IF QL++
Sbjct: 224 IHLNILCVIAQMFIFREQLID 244
>SPAC11D3.09 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 394
Score = 25.4 bits (53), Expect = 7.6
Identities = 18/58 (31%), Positives = 27/58 (46%)
Frame = +3
Query: 12 LNLTN*GSIPLKTSIVNH*NKIMECGFEKGTIKLDSIRNVFYSGQIVTGSVNFTLDRP 185
LNL ++P++T+ N+ KI++C G I L S N QI G +P
Sbjct: 107 LNLYGGYNVPMETNPFNNWAKIVDC----GDIPLTSYDNAVAIKQIENGHFELLTRKP 160
>SPBC428.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 115
Score = 25.4 bits (53), Expect = 7.6
Identities = 10/33 (30%), Positives = 19/33 (57%)
Frame = +2
Query: 479 VIIKYTAISVRELKTIFLSMFYINFSLTEAYWF 577
++ K T+I++ KT+ + F++ AYWF
Sbjct: 77 IVNKTTSIALALFKTLAVISFFLLIGCLFAYWF 109
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 7.6
Identities = 8/20 (40%), Positives = 14/20 (70%)
Frame = -1
Query: 396 HSDQLIKHTSQNFSSSNNCN 337
H + + HT+Q+F S++ CN
Sbjct: 485 HPEVIASHTAQSFKSTHYCN 504
>SPCP1E11.03 |mug170||arrestin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 426
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/26 (34%), Positives = 20/26 (76%)
Frame = +3
Query: 96 KGTIKLDSIRNVFYSGQIVTGSVNFT 173
K T+++ + R++F+SGQI+ ++ +T
Sbjct: 269 KTTLEVHTDRSLFFSGQIIDFTICYT 294
>SPAC1F3.03 |||Lgl family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1004
Score = 25.0 bits (52), Expect = 10.0
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -1
Query: 144 DQNKTHFLLSPTLWCL 97
D N+ F L+P LWCL
Sbjct: 34 DLNRFGFSLNPVLWCL 49
>SPBC244.01c |sid4||SIN component scaffold protein Sid4
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 660
Score = 25.0 bits (52), Expect = 10.0
Identities = 22/76 (28%), Positives = 34/76 (44%), Gaps = 1/76 (1%)
Frame = -1
Query: 567 ASVSEKFI*NILRNIVFNSRTDIAVYL-IMTSLFTSALFINKHNHNTSLARKR*NMPSHS 391
A++S F N+ N +N ++ IAV I L T + + H RK
Sbjct: 401 ATISNDF--NLKGNGRYNEKSQIAVPSEIRVQLSTLDAILLQFEH----LRKELTQARKE 454
Query: 390 DQLIKHTSQNFSSSNN 343
Q+++HTSQN +N
Sbjct: 455 IQILRHTSQNGDQESN 470
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,380
Number of Sequences: 5004
Number of extensions: 57623
Number of successful extensions: 144
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 309878492
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -