Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0599
         (675 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g22753.1 68417.m03284 sterol desaturase family protein simila...    27   8.7  
At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative simila...    27   8.7  

>At4g22753.1 68417.m03284 sterol desaturase family protein similar
           to sterol 4-alpha-methyl-oxidase GI:16973471 from
           [Arabidopsis thaliana]; contains Pfam profile PF01598:
           Sterol desaturase
          Length = 291

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 15/64 (23%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
 Frame = +1

Query: 277 YVLENKIKYNM-----CVK*SVYICIAVIGTAEVLRCMLYQLVGMRGHILSLSCQASVVI 441
           + ++ K+KY++     C K  + + + V+GT +++     Q+VG+R  +   S    V  
Sbjct: 68  FKIQKKVKYSLSDMFQCYKEVMKLFLLVVGTLQIVSYPSIQMVGIRSGLPLPSLMEIVAQ 127

Query: 442 MFIY 453
           + +Y
Sbjct: 128 LVVY 131


>At1g70070.1 68414.m08062 DEAD/DEAH box helicase, putative similar
           to SP|P35207 Antiviral protein SKI2 {Saccharomyces
           cerevisiae}; contains Pfam profiles PF00270: DEAD/DEAH
           box helicase, PF00271: Helicase conserved C-terminal
           domain
          Length = 1171

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 13/18 (72%), Positives = 14/18 (77%)
 Frame = +1

Query: 343 VIGTAEVLRCMLYQLVGM 396
           VI T E+LR MLYQ VGM
Sbjct: 242 VIMTTEILRNMLYQSVGM 259


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,492,290
Number of Sequences: 28952
Number of extensions: 270119
Number of successful extensions: 424
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 422
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1432596384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)