Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0596
         (777 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q16NB2 Cluster: Putative uncharacterized protein; n=2; ...    72   1e-11
UniRef50_UPI0000D56792 Cluster: PREDICTED: similar to CCR4-NOT t...    71   4e-11
UniRef50_Q5TT44 Cluster: ENSANGP00000026958; n=2; Culicidae|Rep:...    62   2e-08
UniRef50_Q94547 Cluster: Regulator of gene activity; n=3; Sophop...    58   2e-07

>UniRef50_Q16NB2 Cluster: Putative uncharacterized protein; n=2;
           Endopterygota|Rep: Putative uncharacterized protein -
           Aedes aegypti (Yellowfever mosquito)
          Length = 513

 Score = 72.1 bits (169), Expect = 1e-11
 Identities = 42/66 (63%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
 Frame = +2

Query: 581 NAGNNYHSVFGEG-GDTSTPPLLDLSEFPSLT-ARGA-GDQ--XXXXXXXXXGSKPYVGM 745
           N+ NN+HSVF  G  +T TPPLLDLSEFPSLT ARG   DQ           GSKPYVGM
Sbjct: 157 NSINNFHSVFDNGTAETGTPPLLDLSEFPSLTNARGGQNDQSLPQSNALQPPGSKPYVGM 216

Query: 746 VKQPTS 763
           VKQPTS
Sbjct: 217 VKQPTS 222


>UniRef50_UPI0000D56792 Cluster: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 2 isoform b; n=2;
           Endopterygota|Rep: PREDICTED: similar to CCR4-NOT
           transcription complex, subunit 2 isoform b - Tribolium
           castaneum
          Length = 483

 Score = 70.5 bits (165), Expect = 4e-11
 Identities = 36/58 (62%), Positives = 43/58 (74%)
 Frame = +2

Query: 590 NNYHSVFGEGGDTSTPPLLDLSEFPSLTARGAGDQXXXXXXXXXGSKPYVGMVKQPTS 763
           ++++SVFG G DT+TP LLDLSEFPSLT R +GD          G+KPYVGMVKQPTS
Sbjct: 65  SSFNSVFGSG-DTNTPSLLDLSEFPSLTNRSSGDN-VPQPSPMPGAKPYVGMVKQPTS 120


>UniRef50_Q5TT44 Cluster: ENSANGP00000026958; n=2; Culicidae|Rep:
           ENSANGP00000026958 - Anopheles gambiae str. PEST
          Length = 537

 Score = 62.1 bits (144), Expect = 2e-08
 Identities = 41/72 (56%), Positives = 43/72 (59%), Gaps = 11/72 (15%)
 Frame = +2

Query: 581 NAGNNYHSVF-GEGGDTSTPPLLDLSEFPSLT-ARGA-GDQ--XXXXXXXXXGSKPY--- 736
           N+ NNYH VF G   +T TPPLLDLSEFPSLT ARG   DQ           GSKPY   
Sbjct: 140 NSINNYHGVFDGSAAETGTPPLLDLSEFPSLTNARGGQNDQSLPQSNALQPPGSKPYGKS 199

Query: 737 ---VGMVKQPTS 763
               GMVKQPTS
Sbjct: 200 VAHFGMVKQPTS 211


>UniRef50_Q94547 Cluster: Regulator of gene activity; n=3;
           Sophophora|Rep: Regulator of gene activity - Drosophila
           melanogaster (Fruit fly)
          Length = 585

 Score = 58.0 bits (134), Expect = 2e-07
 Identities = 40/69 (57%), Positives = 42/69 (60%), Gaps = 11/69 (15%)
 Frame = +2

Query: 590 NNYHSVFGEGG--DTSTPPLLDLSEFPSLT-ARGAGDQ--XXXXXXXXXGSKPY------ 736
           NN+H VFG GG  DTSTP LLD +EFPSLT ARG  DQ           GSKPY      
Sbjct: 141 NNFH-VFGGGGGSDTSTPALLDPTEFPSLTNARGQNDQTLPQSNPLQPPGSKPYGNFFTS 199

Query: 737 VGMVKQPTS 763
            GMVKQPTS
Sbjct: 200 FGMVKQPTS 208


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 696,351,729
Number of Sequences: 1657284
Number of extensions: 12555481
Number of successful extensions: 28755
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 27317
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28665
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 65438977305
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)