Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0596
         (777 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr 2...    27   3.0  
SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   4.0  
SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    26   5.2  
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p...    26   5.2  

>SPBP19A11.02c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 244

 Score = 27.1 bits (57), Expect = 3.0
 Identities = 11/31 (35%), Positives = 19/31 (61%)
 Frame = +1

Query: 628 INTTTSGPKRISITNSKRRG*PSTHYSTTTS 720
           +NTTT+ P   S+  +     P+TH ++TT+
Sbjct: 90  MNTTTTVPPTTSLNTTTTTAPPTTHVNSTTT 120


>SPBP22H7.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 255

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 16/49 (32%), Positives = 25/49 (51%), Gaps = 5/49 (10%)
 Frame = +3

Query: 114 ILVFKILNAQKTSKLDSQQILF-ITSKRKY----LSWQSIRDYEPFLFF 245
           I + ++ N     K  +  IL  ITSKR      ++WQ++   EPFL +
Sbjct: 43  ISILRVFNKPPIKKFHNSNILKDITSKRNATPAKIAWQAMTTREPFLVY 91


>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 410 LSPGRNSTAMPGGVPHQWHLELR 478
           L PG      P G+P+ W+ EL+
Sbjct: 5   LPPGWTEHKAPSGIPYYWNAELK 27


>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 932

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 471 SYVVWSTSFCRPKLQCQQLYLKLI 542
           S  +WS++  RP L CQ ++ K I
Sbjct: 302 SLSIWSSALPRPLLSCQNVFQKSI 325


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,899,914
Number of Sequences: 5004
Number of extensions: 52765
Number of successful extensions: 113
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 109
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 113
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)