Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0596
         (777 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0074 + 14781763-14784191,14784888-14784978,14785180-147852...    29   3.1  
08_02_0749 - 20769224-20770535,20770649-20771510,20771622-207732...    28   9.5  
06_01_0581 - 4153668-4153883,4154070-4155104,4155718-4156292,415...    28   9.5  
03_02_0177 - 6185091-6185355,6185468-6185524,6185725-6186089,618...    28   9.5  
01_03_0179 + 13500413-13500768,13502522-13502642,13502876-135029...    28   9.5  

>02_03_0074 +
           14781763-14784191,14784888-14784978,14785180-14785230,
           14785882-14785947,14786509-14786610
          Length = 912

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 1/42 (2%)
 Frame = +3

Query: 624 THQHHHFWT*ANFHH*QQEARVTKHPL-QHHHLRALNPMLVW 746
           +H HHH  + +   H    A     P+  HHHL  ++P  V+
Sbjct: 168 SHHHHHHHSGSRKRHSMPPAYTAAEPVSHHHHLVVVDPSTVY 209


>08_02_0749 -
           20769224-20770535,20770649-20771510,20771622-20773263,
           20773357-20773701,20773858-20773952,20774218-20774344,
           20774430-20774435
          Length = 1462

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -1

Query: 672 VSDGNSLRSRSGGVDVSPPSPKTEW 598
           V++ N   SR+GG DVSP + K  W
Sbjct: 860 VANFNGKHSRNGGGDVSPAALKCSW 884


>06_01_0581 -
           4153668-4153883,4154070-4155104,4155718-4156292,
           4158457-4158826,4159925-4160590,4161008-4161223,
           4161725-4161793
          Length = 1048

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +2

Query: 596 YHSVFGEGGDTSTPPLLDLSEFPSLTARGA 685
           Y++V G GG T+ PP  + + + SL   GA
Sbjct: 240 YYAVAGNGGATAAPPAPEPAAYRSLLGDGA 269


>03_02_0177 -
           6185091-6185355,6185468-6185524,6185725-6186089,
           6186180-6186332,6186422-6186655,6190532-6190978,
           6191549-6191652,6192240-6192351
          Length = 578

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = -1

Query: 525 VVGIVTSVCKSSLTKQRSSRCH*WGTPPGIAVEL 424
           + G + S  K ++ ++  SRCH W  PP I +EL
Sbjct: 450 IEGKIPSTVKFNV-REPCSRCHGWSVPPLIYLEL 482


>01_03_0179 + 13500413-13500768,13502522-13502642,13502876-13502998,
            13504409-13504497,13504612-13504696,13504852-13505011,
            13505096-13505160,13505296-13505349,13505437-13505527,
            13505685-13505986,13506084-13506365,13506451-13506764,
            13506920-13507080,13507202-13507305,13507379-13507535,
            13507652-13507896,13507995-13508327,13508428-13508751,
            13508816-13508899,13509001-13509169,13509610-13509731,
            13510538-13510792,13511115-13511252
          Length = 1377

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/45 (35%), Positives = 26/45 (57%)
 Frame = +2

Query: 56   SSLQCFIAAFYAKTVLCTIYIGV*NFECTKNIKIGQSTNLVYYIE 190
            S L  F++ F+A  V C +YIG+ N  C + + + + T  V+Y E
Sbjct: 1191 SELYQFVS-FHAVLVNCILYIGIQNSGCVQPVVVVERT--VFYRE 1232


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,862,615
Number of Sequences: 37544
Number of extensions: 349181
Number of successful extensions: 805
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 786
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)