Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0596
         (777 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_45852| Best HMM Match : I-set (HMM E-Value=0)                       29   3.2  
SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)                 29   3.2  
SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)                   29   5.5  
SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)                  28   7.3  
SB_41104| Best HMM Match : p450 (HMM E-Value=0)                        28   7.3  

>SB_45852| Best HMM Match : I-set (HMM E-Value=0)
          Length = 1122

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 13/39 (33%), Positives = 18/39 (46%)
 Frame = +3

Query: 600  IQFLVKVVTHQHHHFWT*ANFHH*QQEARVTKHPLQHHH 716
            I  ++ +  H HHH     ++HH QQ      H   HHH
Sbjct: 1022 ITIIITIFNHYHHHRRRHHHYHHQQQ------HQFHHHH 1054


>SB_16091| Best HMM Match : 7tm_1 (HMM E-Value=9.5e-08)
          Length = 839

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 11/36 (30%), Positives = 15/36 (41%)
 Frame = +3

Query: 609 LVKVVTHQHHHFWT*ANFHH*QQEARVTKHPLQHHH 716
           ++ + TH HHH       HH         +P  HHH
Sbjct: 561 IIAISTHPHHHHLHHHRHHHRHHHYHHHHYPHHHHH 596


>SB_11562| Best HMM Match : SelP_N (HMM E-Value=0.45)
          Length = 453

 Score = 28.7 bits (61), Expect = 5.5
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 9/54 (16%)
 Frame = +3

Query: 582 TLATTTIQFLVKVVT--------HQHHHFWT*ANFHH*QQEARVT-KHPLQHHH 716
           T+ TTTI   + + T        H HHH     + HH  Q  R   +H  +HHH
Sbjct: 288 TITTTTITTAITITTATPPYRYHHHHHHRHHHHHHHHHHQRHRHRHRHRHRHHH 341


>SB_18306| Best HMM Match : TAT_ubiq (HMM E-Value=1.8)
          Length = 272

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 12/45 (26%), Positives = 24/45 (53%)
 Frame = +3

Query: 84  FTRRQFYVPFILVFKILNAQKTSKLDSQQILFITSKRKYLSWQSI 218
           F   +F+  F+L  ++L A    ++  ++ + +   RKY SW +I
Sbjct: 227 FGNVKFFNRFLLKDRVLEAFPKVRISDRRTVIVIKGRKYRSWNAI 271


>SB_41104| Best HMM Match : p450 (HMM E-Value=0)
          Length = 515

 Score = 28.3 bits (60), Expect = 7.3
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = -2

Query: 470 LDAIDGGLRLALQLNYGQATRRPQKLVSHVLRHYQQDL 357
           +D+  GG  LAL  NYG A R  +KL +  LR Y  D+
Sbjct: 120 IDSSLGGKGLALG-NYGPAWRLHRKLFTSSLRQYLSDI 156


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,953,011
Number of Sequences: 59808
Number of extensions: 410540
Number of successful extensions: 914
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 769
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 900
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2119930593
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)