Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0596
         (777 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical...    30   2.1  
AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical ...    28   8.6  
AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like rec...    28   8.6  
AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosoph...    28   8.6  

>AC006708-15|AAF60425.1|  504|Caenorhabditis elegans Hypothetical
           protein Y110A7A.8 protein.
          Length = 504

 Score = 29.9 bits (64), Expect = 2.1
 Identities = 15/34 (44%), Positives = 20/34 (58%)
 Frame = -2

Query: 119 QYKWYIKLSSRKTLL*NTVNLIHLYVTDKCFKIF 18
           QYK  +KLS     + N +N+IH +V DK  K F
Sbjct: 98  QYKLIVKLSHVAADIDNEINVIHKFVRDKYEKRF 131


>AL132902-4|CAC14420.1| 1913|Caenorhabditis elegans Hypothetical
           protein Y71A12B.4 protein.
          Length = 1913

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = +1

Query: 631 NTTTSGPKRISITNSKRRG*PSTHYSTT 714
           +T+  GP  +SI N   RG P++  STT
Sbjct: 4   HTSQPGPSHVSIVNVPERGGPTSSTSTT 31


>AF348166-1|AAK37544.1| 1221|Caenorhabditis elegans Toll-like receptor
            TOL-1 protein.
          Length = 1221

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 175  CLLHRSGNIYLGRVYAIMNHSYSL*NSEQGLII 273
            CLLHR G  Y   ++AI +   +  +S Q LI+
Sbjct: 1086 CLLHRDGPTYCSNLHAISDELIAQMDSSQCLIL 1118


>AC006604-2|AAF39752.2| 1221|Caenorhabditis elegans Toll (drosophila)
            family protein 1 protein.
          Length = 1221

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +1

Query: 175  CLLHRSGNIYLGRVYAIMNHSYSL*NSEQGLII 273
            CLLHR G  Y   ++AI +   +  +S Q LI+
Sbjct: 1086 CLLHRDGPTYCSNLHAISDELIAQMDSSQCLIL 1118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,348,190
Number of Sequences: 27780
Number of extensions: 315181
Number of successful extensions: 722
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 698
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 722
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1872168044
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)