Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0591
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   6.1  
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch...    25   6.1  
SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase E3|Schizosac...    25   6.1  
SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|ch...    25   8.0  
SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase Ubp10|Schizosa...    25   8.0  

>SPAC2F3.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 279

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 11/30 (36%), Positives = 16/30 (53%)
 Frame = +2

Query: 374 LTNGQPIEQHPTEKDVEGPSENNSTSDSEA 463
           LTN QP+E  P    ++ P E    ++ EA
Sbjct: 21  LTNVQPVENKPAWISMKSPLEKEIANEYEA 50


>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
           Y|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1002

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -3

Query: 338 HMNANTTPKHVLLIYPASPEDVGI 267
           H+N    P H L +  + PE +GI
Sbjct: 560 HVNLKAFPDHTLRVKDSKPESLGI 583


>SPAC12G12.01c ||SPAC630.02|ubiquitin-protein ligase
           E3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 905

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/27 (29%), Positives = 14/27 (51%)
 Frame = +3

Query: 207 NGTARRALVIRISGSKSI*WNTNIFWR 287
           NG++     + +  S  + W T+I WR
Sbjct: 16  NGSSDEIRYVAVKASPKVNWKTHIIWR 42


>SPBC3B8.04c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 867

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
 Frame = +3

Query: 63  TMSKRLWILLEWITENYAYPAYCVVNVEKLSYH-RTEISPGKEILVRLKNGTARRALVIR 239
           T+SKRL I+ EW  +         V + +L  H R  ++  +  + R      RR    R
Sbjct: 309 TLSKRLNIVAEWYAK-LCCQGDTFVAIRRLRGHLREYVAWERNTIWREMMAMERRTQAAR 367

Query: 240 ISGSKSI 260
           +SG K +
Sbjct: 368 LSGLKPV 374


>SPBC577.07 |ubp10||ubiquitin C-terminal hydrolase
           Ubp10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 502

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -2

Query: 381 FVNASTLKGTVFVSSYERKYNAKTCLTYI 295
           FVN STLK  V   SY+ + +A   + Y+
Sbjct: 117 FVNCSTLKFYVLPESYQVESSALQDIAYV 145


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,110
Number of Sequences: 5004
Number of extensions: 36852
Number of successful extensions: 117
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)