Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0591
         (487 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)                   29   2.7  
SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)                  29   2.7  
SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41)              28   3.6  
SB_22125| Best HMM Match : TPR_1 (HMM E-Value=7.7e-13)                 28   3.6  
SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)                 28   3.6  
SB_35103| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   6.2  
SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)                    27   8.2  
SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06)             27   8.2  
SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)                      27   8.2  

>SB_58015| Best HMM Match : rve (HMM E-Value=0.00087)
          Length = 1333

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 185 RNISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQ 292
           RN+S+I K ++E    + D+ E + LVEY   L  +
Sbjct: 322 RNVSEISKGDAEILNEFNDVFEGLGLVEYHITLSNE 357


>SB_8440| Best HMM Match : RVT_1 (HMM E-Value=4.3e-18)
          Length = 878

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 13/36 (36%), Positives = 21/36 (58%)
 Frame = +2

Query: 185 RNISKIKKRNSETCFSYKDIREQIYLVEYQHLLERQ 292
           RN+S+I K ++E    + D+ E + LVEY   L  +
Sbjct: 214 RNVSEISKGDAEILNEFNDVFEGLGLVEYHITLSNE 249


>SB_28604| Best HMM Match : FerB (HMM E-Value=5.19994e-41)
          Length = 687

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 463 SFTVACTIVFAGAFYVFFSW 404
           S T AC  VF G+FY F  W
Sbjct: 387 SSTAACNPVFDGSFYYFLPW 406


>SB_22125| Best HMM Match : TPR_1 (HMM E-Value=7.7e-13)
          Length = 452

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 17/61 (27%), Positives = 32/61 (52%), Gaps = 3/61 (4%)
 Frame = +1

Query: 7   SGENSLLKSLCAFINLKFALCLNDYGYCSSGLRKTT---LIQRIAWSMLRNYHITERKSV 177
           S E   L+ +  ++N K AL LND+  C S   + T    ++ + ++ L N++ T + S 
Sbjct: 231 SAETFHLRGMLQYMNGKPALALNDFKACQSFDPQNTACLYMKAVCYATLGNFYETVKMST 290

Query: 178 R 180
           +
Sbjct: 291 K 291


>SB_9150| Best HMM Match : PspA_IM30 (HMM E-Value=0.98)
          Length = 242

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
 Frame = +2

Query: 389 PIEQHPTEK-DVEGPSENNSTSDSEAE 466
           PIE+  T+  D EGP EN  TS  EAE
Sbjct: 73  PIEKAETQPVDTEGPVENAETSFEEAE 99


>SB_35103| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 94

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = +3

Query: 60  CTMSKRLWILLEWITENYAYPAYCVVNVEKLSYHRT 167
           CT  K    LL+ I   + +    +VN  K S+HRT
Sbjct: 40  CTQRKNNVALLKGIVMKFTFNTIGIVNYPKQSHHRT 75


>SB_27857| Best HMM Match : Cadherin (HMM E-Value=0)
          Length = 2418

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 14/29 (48%), Positives = 17/29 (58%)
 Frame = +2

Query: 338  ELTNTVPFNVDALTNGQPIEQHPTEKDVE 424
            +L    PFNV AL NG+P    P E DV+
Sbjct: 1626 DLPKIYPFNVKALDNGEP----PQETDVK 1650


>SB_38785| Best HMM Match : adh_short (HMM E-Value=2.4e-06)
          Length = 267

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/47 (31%), Positives = 22/47 (46%)
 Frame = +2

Query: 308 HVLALYLRSYELTNTVPFNVDALTNGQPIEQHPTEKDVEGPSENNST 448
           H L L+ +  ++  T  FNV  L   Q I+  PTE    G   N ++
Sbjct: 115 HALDLFEKVLKVNTTGSFNVIRLVAEQMIKNEPTEGGERGVITNTAS 161


>SB_5632| Best HMM Match : XRN_N (HMM E-Value=3.9)
          Length = 766

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = +1

Query: 88  CSSGLRKTTLIQRI-AWSMLRNYHITERKSVRE 183
           C+ G R++   Q+I AWS  + Y+ T  + VRE
Sbjct: 238 CTPGQRRSITTQQIHAWSEKKYYYTTPARLVRE 270


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,924,896
Number of Sequences: 59808
Number of extensions: 261076
Number of successful extensions: 826
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 773
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 826
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1026164244
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)