Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0591
         (487 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g31412.1 68418.m03722 hypothetical protein contains Pfam doma...    28   2.9  
At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR...    28   2.9  
At1g19220.1 68414.m02392 transcriptional factor B3 family protei...    27   5.1  
At5g67280.1 68418.m08483 leucine-rich repeat transmembrane prote...    27   6.7  
At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger) fa...    27   6.7  
At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger) fa...    27   6.7  
At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger) fa...    27   6.7  

>At5g31412.1 68418.m03722 hypothetical protein contains Pfam domain,
           PF04937: Protein of unknown function (DUF 659)
          Length = 433

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 3/40 (7%)
 Frame = +2

Query: 356 PFNVDALTNGQPIEQHPTEK---DVEGPSENNSTSDSEAE 466
           P   D   NG+P+ Q P EK   D+E   E++ T D E E
Sbjct: 377 PSERDEEPNGEPVYQTPNEKPREDLESHEEHDITIDIEFE 416


>At4g16860.1 68417.m02547 disease resistance protein (TIR-NBS-LRR
            class), putative domain signature TIR-NBS-LRR exists,
            suggestive of a disease resistance protein.
          Length = 1147

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = +2

Query: 155  ISQNGNQSGKRNISKIKKRNSETCFSYKDIREQIYLVEYQHLL 283
            +S+N   + +R   ++ +RNS + FSYKD    +Y V +  ++
Sbjct: 1100 LSENIEYTCERFWDELYERNSRSIFSYKDEDGDVYWVNWDLMM 1142


>At1g19220.1 68414.m02392 transcriptional factor B3 family protein /
           auxin-responsive factor AUX/IAA-related contains Pfam
           profile: PF02309 AUX/IAA family
          Length = 1086

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -3

Query: 347 SSAHMNANTTPKHVLLIYPASPEDVGIPLNRF 252
           ++AH NAN++P  +     ASP +  +PL ++
Sbjct: 251 AAAHANANSSPFTIFFNPRASPSEFVVPLAKY 282


>At5g67280.1 68418.m08483 leucine-rich repeat transmembrane protein
           kinase, putative
          Length = 751

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +2

Query: 305 RHVLALYLRSYELTNTVPFNVDALTNGQPIE 397
           RHV  L L S  LT T+P N+ +L + Q ++
Sbjct: 76  RHVTVLSLPSSNLTGTLPSNLGSLNSLQRLD 106


>At5g22000.3 68418.m02560 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 375

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 377 TNGQPIEQH-PTEKDVEGPSENNSTSDS 457
           +N +P+ Q  P+E+D  GPSE  S S+S
Sbjct: 234 SNSRPLNQSSPSEQDRAGPSELQSFSES 261


>At5g22000.2 68418.m02559 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 375

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 377 TNGQPIEQH-PTEKDVEGPSENNSTSDS 457
           +N +P+ Q  P+E+D  GPSE  S S+S
Sbjct: 234 SNSRPLNQSSPSEQDRAGPSELQSFSES 261


>At5g22000.1 68418.m02558 zinc finger (C3HC4-type RING finger)
           family protein contains Pfam profile: PF00097 zinc
           finger, C3HC4 type (RING finger)
          Length = 375

 Score = 27.1 bits (57), Expect = 6.7
 Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
 Frame = +2

Query: 377 TNGQPIEQH-PTEKDVEGPSENNSTSDS 457
           +N +P+ Q  P+E+D  GPSE  S S+S
Sbjct: 234 SNSRPLNQSSPSEQDRAGPSELQSFSES 261


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,646,531
Number of Sequences: 28952
Number of extensions: 182581
Number of successful extensions: 498
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 498
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 838967680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)