Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0590
         (679 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    29   0.82 
SPAC3G9.15c |fcf2||rRNA processing protein Fcf2 |Schizosaccharom...    28   1.4  
SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces pomb...    28   1.4  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    27   3.3  
SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|...    26   5.8  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    25   7.6  
SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|c...    25   7.6  
SPAC110.02 |pds5||cohesin-associated protein Pds5|Schizosaccharo...    25   7.6  

>SPBC3E7.01 |fab1|ste12,
            SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
            Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 28.7 bits (61), Expect = 0.82
 Identities = 13/34 (38%), Positives = 17/34 (50%)
 Frame = -2

Query: 414  TWSLYKGVVGSNPAKGKYLYDKYKNVFSRVMDVY 313
            +W   KG+VG  P        +YKN F + MD Y
Sbjct: 1882 SWVKEKGLVGRGPEPTIVTPKQYKNRFRKAMDCY 1915


>SPAC3G9.15c |fcf2||rRNA processing protein Fcf2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 230

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +2

Query: 353 SYKYFPLAGFEPTTPLYSDHVT 418
           S  Y   A FEPT P+Y  HV+
Sbjct: 75  SESYINDASFEPTVPIYESHVS 96


>SPBC30D10.15 |||snoRNP assembly factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 344 LYLSYKYFPLAGFEPTTPLYSDHVTYHYTRRP 439
           +Y +Y Y P   F P  P+Y+D + Y+    P
Sbjct: 453 MYYNYNY-PQPSFPPFHPIYNDSIGYYSQANP 483


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +2

Query: 362 YFPLAGFEPTTPLYSDHVTYHY 427
           YF +AG++ + P+Y+  + YHY
Sbjct: 322 YFNIAGYQASVPIYAKEL-YHY 342


>SPAC186.09 |||pyruvate decarboxylase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 572

 Score = 25.8 bits (54), Expect = 5.8
 Identities = 7/28 (25%), Positives = 15/28 (53%)
 Frame = -3

Query: 428 CSGK*HGHYTRGSWVRIPPRENICMINI 345
           C+G     Y+   W  +PP+ N+  +++
Sbjct: 293 CAGTTFTDYSSNGWTSLPPKANVLHVDV 320


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = +2

Query: 323 ITLEKTFLYLSYKYFPLAGFEPTTPLYSDHVT 418
           +++EK   Y+S   F + GF  T  +YS +++
Sbjct: 693 VSMEKLGFYMSGYLFDIPGFNSTQRIYSGNLS 724


>SPAC824.02 |||GPI inositol deacylase|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1142

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = -1

Query: 184  FIIYYKASKSYLSRN*QSCLILYTCYNIFIYRTNIFYIKN 65
            + + Y A K YL  N    + LY  + +F+Y  N F+++N
Sbjct: 1083 YSLIYGAEKPYLIHN---VVGLYFFWLLFLYAKNGFFVQN 1119


>SPAC110.02 |pds5||cohesin-associated protein
           Pds5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1205

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 112 CYNIFIYRTNIFYIKNSNL 56
           C+ IF+YR+ +F    SN+
Sbjct: 612 CFRIFVYRSALFAFNKSNV 630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,679,206
Number of Sequences: 5004
Number of extensions: 55491
Number of successful extensions: 128
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 122
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)