Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0590
         (679 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)                   28   8.0  
SB_43085| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)                 28   8.0  
SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   8.0  

>SB_11852| Best HMM Match : fn3 (HMM E-Value=1.2e-24)
          Length = 691

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = +3

Query: 327 PWKRHFYIYHTNIFPWRDSNPRPPCIVTMSLTTTPDGRL 443
           PW    +IY  + + +R +   P C V +++T   D R+
Sbjct: 49  PWSAFIHIYRHHYYYYRQAMFSPECKVVLAITEPQDLRV 87


>SB_43085| Best HMM Match : 7tm_1 (HMM E-Value=5.4e-08)
          Length = 532

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 13/31 (41%), Positives = 19/31 (61%), Gaps = 1/31 (3%)
 Frame = -1

Query: 133 SCLILYTCYNI-FIYRTNIFYIKNSNLICFC 44
           S L+LYT   + FIY T +  I + +L+C C
Sbjct: 154 SALVLYTASRLYFIYVTLVAVIADLSLVCVC 184


>SB_11434| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 866

 Score = 27.9 bits (59), Expect = 8.0
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +2

Query: 536 CEFLTFSLE*KLTPVWSLP 592
           C F+TF L   +TP+WS P
Sbjct: 229 CAFVTFRLNDSVTPLWSKP 247


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,349,290
Number of Sequences: 59808
Number of extensions: 398099
Number of successful extensions: 850
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 756
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 849
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1745338465
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)