Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0590
         (679 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase fa...    29   2.8  
At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase fa...    29   2.8  
At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest ...    27   8.6  
At2g14920.1 68415.m01697 sulfotransferase family protein similar...    27   8.6  
At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase fa...    27   8.6  

>At3g13900.1 68416.m01756 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|Q9Y2Q0], Mus musculus [SP|P70704]; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1243

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 343 KCLFQGYGRILNMCMYIIKILHLFPLS 263
           KCL++ + R+ N    +  IL +FPLS
Sbjct: 76  KCLYEQFHRVANFYFLVAAILSVFPLS 102


>At1g54280.1 68414.m06188 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1240

 Score = 29.1 bits (62), Expect = 2.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 343 KCLFQGYGRILNMCMYIIKILHLFPLS 263
           KCL++ + R+ N    +  IL +FPLS
Sbjct: 77  KCLYEQFHRVANFYFLVAAILSVFPLS 103


>At4g35800.1 68417.m05087 DNA-directed RNA polymerase II largest
            subunit (RPB205) (RPII) (RPB1) nearly identical to
            P|P18616 DNA-directed RNA polymerase II largest subunit
            (EC 2.7.7.6) {Arabidopsis thaliana}
          Length = 1840

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/23 (52%), Positives = 13/23 (56%)
 Frame = +2

Query: 362  YFPLAGFEPTTPLYSDHVTYHYT 430
            Y P AG+ PT P YS   T  YT
Sbjct: 1795 YSPSAGYSPTLPGYSPSSTGQYT 1817


>At2g14920.1 68415.m01697 sulfotransferase family protein similar to
           steroid sulfotransferase from [Brassica napus]
           GI:3420008, GI:3420004; contains Pfam profile PF00685:
           Sulfotransferase domain
          Length = 333

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = -1

Query: 130 CLILYTCYNIFIYRTNIFYIKNSNLICFC*PFSLQARF 17
           C I+Y C N+     +++Y + S  I     +SL+A F
Sbjct: 161 CKIVYVCRNVKDVMVSVWYFRQSKKITRAEDYSLEAIF 198


>At1g17500.1 68414.m02150 haloacid dehalogenase-like hydrolase
           family protein similar to Potential
           phospholipid-transporting ATPase (EC 3.6.3.1) from Homo
           sapiens [SP|O43520], Mus musculus [SP|P70704]; contains
           InterPro accession IPR005834: Haloacid dehalogenase-like
           hydrolase
          Length = 1218

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -1

Query: 343 KCLFQGYGRILNMCMYIIKILHLFPLS 263
           KCL++ + R  N    +  IL +FPLS
Sbjct: 76  KCLYEQFHRAANFYFLVAAILSVFPLS 102


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,484,105
Number of Sequences: 28952
Number of extensions: 269702
Number of successful extensions: 561
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 551
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1428369392
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)