Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0588
         (590 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1271.02 |stt3||oligosaccharyltransferase subunit Stt3|Schizo...    27   1.5  
SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66 |...    27   1.5  
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    27   2.7  
SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomy...    27   2.7  
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz...    26   3.6  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    26   3.6  
SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual        26   4.7  
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual        26   4.7  
SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase Rqh1|...    26   4.7  
SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting pr...    25   6.2  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    25   6.2  
SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomy...    25   6.2  
SPBC3B9.09 |vps36||RBZ zinc finger protein Vps36|Schizosaccharom...    25   8.3  
SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.3  
SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomy...    25   8.3  
SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyce...    25   8.3  

>SPBC1271.02 |stt3||oligosaccharyltransferase subunit
           Stt3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 752

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 10/37 (27%), Positives = 21/37 (56%)
 Frame = -3

Query: 318 WYCIYFDISLVRWGLPVRQHSIMFSNCSSDSFFVLIF 208
           W  ++FD+  + W LPV  + + F    ++  F++I+
Sbjct: 363 WSSLFFDLQFLIWLLPVGVY-LCFKELRNEHVFIIIY 398


>SPAC167.03c |snu66||U4/U6 x U5 tri-snRNP complex subunit Snu66
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 649

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
 Frame = +1

Query: 241 IGKHDAVLSNWESPPHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPK-KRKKEKSI 417
           IG  +++  N     H++D K  T        EPT + S        K+ K K+KK KS 
Sbjct: 241 IGPQNSLTVNSTIEKHKSDNK-KTFGTLVSFVEPTITGSEQSDYRQIKIKKSKKKKSKSD 299

Query: 418 KDGGVNEKPANGEMKKDPS 474
           +   + E  A  E + DPS
Sbjct: 300 RRKRLVELDAENENENDPS 318


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = +1

Query: 262 LSNWESPPHETD 297
           +SNWE PP ETD
Sbjct: 494 MSNWEPPPKETD 505


>SPAC3F10.17 |||ribosome biogenesis protein Ltv1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 386

 Score = 26.6 bits (56), Expect = 2.7
 Identities = 11/39 (28%), Positives = 24/39 (61%)
 Frame = +1

Query: 382 KVPKKRKKEKSIKDGGVNEKPANGEMKKDPSLVSANNIK 498
           K+ +K++ + +  DG  +++P + E  + P LVS++  K
Sbjct: 233 KLEQKKQPDVASSDGDFSDEPESEERDEVPELVSSSKSK 271


>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 873

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 19/56 (33%), Positives = 23/56 (41%), Gaps = 1/56 (1%)
 Frame = +1

Query: 349 SHSTTPAIVDNKVPKKRKKE-KSIKDGGVNEKPANGEMKKDPSLVSANNIKPGDAT 513
           +  TT   V NK P K  +E KS KDG     P    +   PS    + I P   T
Sbjct: 727 TRETTSPSVQNKTPTKYHRELKSSKDGHEQASPL---VSSSPSGSFTSQISPAATT 779


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 16/56 (28%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
 Frame = +1

Query: 277 SPPHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKD-GGVNEK 441
           +P ++    INT  P   TT+ +AS+S  PA+  +  P       + ++ G  +EK
Sbjct: 248 APTNKPSTDINTTDPATQTTQVSASNS--PALSGSSTPSNTSSRSNRQNHGNFSEK 301


>SPBC557.05 |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 433

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +3

Query: 450 RRDEERSVTCQC*QYKTG*CNEK 518
           R++ E S TC+C Q +T  CN+K
Sbjct: 290 RKNSEVSKTCKCLQKETIRCNKK 312


>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 450

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +1

Query: 331 TTEPTASHSTTPAIVDNKVPKKRKKEKSIKD 423
           TTE  A+H ++      ++PK+ +KE S  D
Sbjct: 373 TTESKATHDSSETSSSKELPKEEEKESSSFD 403


>SPAC2G11.12 |rqh1|hus2, rad12, rec9|RecQ type DNA helicase
           Rqh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1328

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 17/57 (29%), Positives = 25/57 (43%)
 Frame = +1

Query: 331 TTEPTASHSTTPAIVDNKVPKKRKKEKSIKDGGVNEKPANGEMKKDPSLVSANNIKP 501
           T + T SHST+ + V   + K     + IKD  V  +       K  S+  +N  KP
Sbjct: 136 TADTTVSHSTSSSNVPRSLNKIHDPSRFIKDNDVENRIHVSSASKVASI--SNTSKP 190


>SPAC1A6.01c ||SPAC23C4.20c|human thyroid receptor interacting
           protein homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 16/54 (29%), Positives = 21/54 (38%)
 Frame = +1

Query: 388 PKKRKKEKSIKDGGVNEKPANGEMKKDPSLVSANNIKPGDATRRYHGNPVLRRK 549
           P   K +K++     N +  N      PS   ANN + G     Y  NP  R K
Sbjct: 71  PSIMKNKKNVTPNN-NIRQKNTATSSHPSFYIANNKQKGYDEEMYKVNPASRNK 123


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 1/23 (4%)
 Frame = +1

Query: 346 ASHS-TTPAIVDNKVPKKRKKEK 411
           +SH+  TP    NK  KKRKKEK
Sbjct: 76  SSHTFQTPTKKGNKTKKKRKKEK 98


>SPAC56F8.09 |rrp8||rRNA methyltransferase Rrp8 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 15/50 (30%), Positives = 25/50 (50%)
 Frame = +1

Query: 349 SHSTTPAIVDNKVPKKRKKEKSIKDGGVNEKPANGEMKKDPSLVSANNIK 498
           S S +    +++  KKRKK +    G   EK     +KK  S+ + N++K
Sbjct: 12  SKSASDQTKESRKEKKRKKGERKNVGDKGEKLNEKVLKKAKSVTTNNSLK 61


>SPBC3B9.09 |vps36||RBZ zinc finger protein
           Vps36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 467

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 11/29 (37%), Positives = 19/29 (65%)
 Frame = +1

Query: 376 DNKVPKKRKKEKSIKDGGVNEKPANGEMK 462
           D KV +K   EKS++ GG+++   + EM+
Sbjct: 204 DTKVLRKAILEKSLRMGGIHDLEQSHEMQ 232


>SPAC7D4.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 551

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 13/35 (37%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 256 AVLSNWESPPHETDVKINT--IPPDPLTTEPTASH 354
           +V   +ESPPH +D +I+   +P    T EP+A +
Sbjct: 496 SVYGVYESPPHMSDSRISRQHMPLTHTTYEPSAPY 530


>SPAC6G9.12 |cfr1||Chs five related protein Cfr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 620

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = +1

Query: 286 HETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKK 396
           H T++++N +  +      T   S+ P   DN +P K
Sbjct: 567 HTTNLQLNALDKEEDLNITTVKQSSEPTADDNLIPNK 603


>SPAC1093.01 ||SPAC12B10.18|PPR repeat protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1261

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 192 SKHVERKLKRKNYLKSNW 245
           SKH+ RK+  K+  K+NW
Sbjct: 833 SKHLYRKISTKSLEKANW 850


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,211,702
Number of Sequences: 5004
Number of extensions: 42168
Number of successful extensions: 170
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 169
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)