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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0588
         (590 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g01130.1 68414.m00016 expressed protein ; expression supporte...    30   1.3  
At5g22840.1 68418.m02670 protein kinase family protein contains ...    29   1.8  
At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea...    29   2.3  
At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr...    29   2.3  
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu...    29   2.3  
At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ...    29   3.1  
At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic...    29   3.1  
At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma...    28   4.1  
At1g15280.2 68414.m01829 glycine-rich protein                          28   4.1  
At1g15280.1 68414.m01828 glycine-rich protein                          28   4.1  
At3g44530.1 68416.m04786 transducin family protein / WD-40 repea...    28   5.4  
At1g13030.1 68414.m01511 sphere organelles protein-related conta...    28   5.4  
At4g35510.1 68417.m05048 expressed protein                             27   7.1  
At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family p...    27   7.1  
At1g75800.1 68414.m08805 pathogenesis-related thaumatin family p...    27   7.1  
At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family...    27   9.4  
At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ...    27   9.4  
At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1...    27   9.4  
At1g35375.1 68414.m04387 hypothetical protein                          27   9.4  

>At1g01130.1 68414.m00016 expressed protein ; expression supported
           by MPSS
          Length = 180

 Score = 29.9 bits (64), Expect = 1.3
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +1

Query: 259 VLSNWESPPHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKS 414
           +L +W+SPP E  + + ++P  P   E   + S  P  ++++V  K     S
Sbjct: 12  ILGDWDSPPPEERIVMVSVPTSP---ESDYARSNQPKEIESRVSDKETASAS 60


>At5g22840.1 68418.m02670 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 538

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 14/51 (27%), Positives = 26/51 (50%)
 Frame = +1

Query: 298 VKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDGGVNEKPAN 450
           VK   +P  P+  E   S++ +  +  N+  K RKK K ++    NE+ ++
Sbjct: 206 VKDKAVPERPVEKEKPKSYTYSADLTKNQKKKIRKKAKKVEGSEENERDSS 256


>At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly
           identical to cohesion family protein SYN3 [Arabidopsis
           thaliana] GI:12006362; supporting cDNA
           gi|12006361|gb|AF281155.1|AF281155
          Length = 693

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = +1

Query: 277 SPPHETDVKINTIPPDPLTTEPTASHSTTPA 369
           SP  E +V+IN + P P +T P ++   +PA
Sbjct: 449 SPTREAEVEINPVSPIPDSTNPDSTVQLSPA 479


>At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family
           protein contains Pfam profile: PF00010 helix-loop-helix
           DNA-binding domain
          Length = 371

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%)
 Frame = +1

Query: 325 PLTTEPTASHSTTPAIVDNKVPKKR---KKEKSIKDGGVNEKPANGEMKKDPSLVSANN 492
           P T E   S    P  V ++V   +   +K KSI  G   E PA+  +    S VS  N
Sbjct: 87  PTTQESNKSSLLDPDSVSDRVHTTKSNSRKRKSIPSGNGKESPASSSLTASNSKVSGEN 145


>At1g79280.1 68414.m09242 expressed protein weak similarity to
            Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
          Length = 2111

 Score = 29.1 bits (62), Expect = 2.3
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 265  SNWESPPHETDVKINT--IPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDGG 429
            +N +    ETD+K  T      P++T PT S +   AI  +  P+    +++   GG
Sbjct: 1987 ANDQQEAPETDIKPETSAATTSPVSTAPTTSSTLASAITSSGAPETEDPKRAPSPGG 2043


>At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 501

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
 Frame = +1

Query: 295 DVKINTIPPDPLTTEPTASHSTTPAIVDNKVP-KKRKKEKSIKDGGVNEKPANGEMKKDP 471
           ++K ++IP +    +  A +       D  V  KK KKEK + D G +EK    E  ++ 
Sbjct: 52  EIKESSIPDEKKGDKRNAENEEEEEETDLPVKTKKSKKEKKLTDSG-DEKETISEAVEES 110

Query: 472 SLVSANNIKPGD 507
            LVS    +  D
Sbjct: 111 GLVSKRKKRKRD 122


>At5g40340.1 68418.m04894 PWWP domain-containing protein KED,
           Nicotiana tabacum, EMBL:AB009883
          Length = 1008

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%)
 Frame = +1

Query: 382 KVPKKRKKEKSIKDGGVNE---KPANGEMKKDPSLVSANNIKPGDATRRYHGNP 534
           K  +KRKK +S K+GG  E   K AN   KK+     + + K  D        P
Sbjct: 729 KKERKRKKSESKKEGGEGEETQKEANESTKKERKRKKSESKKQSDGEEETQKEP 782


>At2g46240.1 68415.m05750 IQ domain-containing protein / BAG
            domain-containing protein contains Pfam profiles PF00612:
            IQ calmodulin-binding motif, PF02179: BAG (Apoptosis
            regulator Bcl-2 protein) domain
          Length = 1043

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 17/48 (35%), Positives = 24/48 (50%)
 Frame = +1

Query: 283  PHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDG 426
            P ET+V +N   P+P  TEP  S  T   + +N+   K   E  +K G
Sbjct: 951  PLETEVILNEQAPEPEITEPGISKETKKLMEENQ-RFKETMETLVKAG 997


>At1g15280.2 68414.m01829 glycine-rich protein
          Length = 585

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +1

Query: 247 KHDAVLSNWESPPHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDG 426
           +H AV+ +  S P +T +  N  PPD +      S S T A++        K + +++ G
Sbjct: 387 QHSAVVRSLSSSPQKTSLSRNRYPPDEI-----ESSSETAALI-------AKGKGTLRPG 434

Query: 427 GVNEKPANGE--MKKDPSLVSANN 492
           G +    +G   M +  SL SA+N
Sbjct: 435 GSSSFMYSGSQMMGRPESLTSADN 458


>At1g15280.1 68414.m01828 glycine-rich protein
          Length = 584

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%)
 Frame = +1

Query: 247 KHDAVLSNWESPPHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDG 426
           +H AV+ +  S P +T +  N  PPD +      S S T A++        K + +++ G
Sbjct: 386 QHSAVVRSLSSSPQKTSLSRNRYPPDEI-----ESSSETAALI-------AKGKGTLRPG 433

Query: 427 GVNEKPANGE--MKKDPSLVSANN 492
           G +    +G   M +  SL SA+N
Sbjct: 434 GSSSFMYSGSQMMGRPESLTSADN 457


>At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat
            family protein contains 6 (4 significant) WD-40 repeats
            (PF0400); nuclear protein HIRA, mouse, PIR:S68141
          Length = 1051

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 322  DPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDGGVNEKPANGEMKK 465
            D + ++P A  +TTP  +DN  P   +   ++ D GV EK  + +  K
Sbjct: 995  DQIGSDPPAMTATTPMTIDNDKPVSLENPAAL-DIGVCEKTGSEDRDK 1041


>At1g13030.1 68414.m01511 sphere organelles protein-related contains
           weak similarity to Swiss-Prot:Q09003 sphere organelles
           protein SPH-1 (Sphere protein 1) [Xenopus laevis]
          Length = 608

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +1

Query: 331 TTEPTASHSTTPAIVDNKVPKKRKKEKSIKDGGVNEKPANGEMKK 465
           TTE +       A+V N V KK+KK KS+     N    N +  K
Sbjct: 183 TTEESPDERENTAVVSNVVKKKKKK-KSLDVQSANNDEQNNDSTK 226


>At4g35510.1 68417.m05048 expressed protein
          Length = 333

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = +1

Query: 391 KKRKKEKSIKDGGVNEKPANGEMKKDPSLVSANNIKPG 504
           KK+KK KS+ +GG +     G MK    +V +++   G
Sbjct: 197 KKQKKNKSVVEGGSSSIIVTGSMKDIAGVVDSDSSYEG 234


>At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family
           protein contains Pfam profile PF05071: NADH:ubiquinone
           oxidoreductase 17.2 kD subunit
          Length = 184

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = +1

Query: 286 HETDVKINTIPPDPLTTEPTASHST 360
           HE ++ ++  PP+P TTEP+ S S+
Sbjct: 151 HEPEI-VSAEPPEPKTTEPSGSGSS 174


>At1g75800.1 68414.m08805 pathogenesis-related thaumatin family
           protein similar to receptor serine/threonine kinase PR5K
           [Arabidopsis thaliana] GI:1235680; contains Pfam
           profile: PF00314 Thaumatin family
          Length = 330

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 11/17 (64%), Positives = 12/17 (70%)
 Frame = +1

Query: 319 PDPLTTEPTASHSTTPA 369
           PDP  T PT + STTPA
Sbjct: 262 PDPKPTTPTGTSSTTPA 278


>At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family
            protein
          Length = 1332

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%)
 Frame = +1

Query: 265  SNWESPPHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDGGVN-EK 441
            S+W+SP   +   I  +     TT P  SH    A +      K    K+I++ G   + 
Sbjct: 1067 SDWQSPVRSSPDDIYAVCTSISTTTPQRSHEAVEASLPAITRTKSNLGKNIREHGCKVQG 1126

Query: 442  PANGEMKKD-PSLV 480
                E+ +D PS V
Sbjct: 1127 TGKPEVSRDRPSSV 1140


>At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam
            PF00400: WD domain, G-beta repeats;
          Length = 1327

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +1

Query: 292  TDVKINTIPPDPLTTEPTASHSTT 363
            T   + T PP+P+TT P  + +TT
Sbjct: 1272 TPESVTTAPPEPITTAPPETVTTT 1295


>At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19)
           non-consensus splice site at the intron:exon boundary
           (AT:exon)
          Length = 247

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 14/37 (37%), Positives = 16/37 (43%)
 Frame = +1

Query: 259 VLSNWESPPHETDVKINTIPPDPLTTEPTASHSTTPA 369
           V S   +PP  T     T  P P TT P  S +  PA
Sbjct: 32  VTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPA 68


>At1g35375.1 68414.m04387 hypothetical protein
          Length = 140

 Score = 27.1 bits (57), Expect = 9.4
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +3

Query: 174 QMTKNWSKHVERKLKRKNYLKSNWK 248
           Q+  NW   V++K+K++  LKS WK
Sbjct: 19  QLFDNWPPMVQKKIKKEKVLKS-WK 42


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,617,676
Number of Sequences: 28952
Number of extensions: 222381
Number of successful extensions: 773
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 767
length of database: 12,070,560
effective HSP length: 77
effective length of database: 9,841,256
effective search space used: 1171109464
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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