BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0588 (590 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At1g01130.1 68414.m00016 expressed protein ; expression supporte... 30 1.3 At5g22840.1 68418.m02670 protein kinase family protein contains ... 29 1.8 At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nea... 29 2.3 At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family pr... 29 2.3 At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 2.3 At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing ... 29 3.1 At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nic... 29 3.1 At2g46240.1 68415.m05750 IQ domain-containing protein / BAG doma... 28 4.1 At1g15280.2 68414.m01829 glycine-rich protein 28 4.1 At1g15280.1 68414.m01828 glycine-rich protein 28 4.1 At3g44530.1 68416.m04786 transducin family protein / WD-40 repea... 28 5.4 At1g13030.1 68414.m01511 sphere organelles protein-related conta... 28 5.4 At4g35510.1 68417.m05048 expressed protein 27 7.1 At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family p... 27 7.1 At1g75800.1 68414.m08805 pathogenesis-related thaumatin family p... 27 7.1 At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family... 27 9.4 At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 ... 27 9.4 At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP1... 27 9.4 At1g35375.1 68414.m04387 hypothetical protein 27 9.4 >At1g01130.1 68414.m00016 expressed protein ; expression supported by MPSS Length = 180 Score = 29.9 bits (64), Expect = 1.3 Identities = 14/52 (26%), Positives = 26/52 (50%) Frame = +1 Query: 259 VLSNWESPPHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKS 414 +L +W+SPP E + + ++P P E + S P ++++V K S Sbjct: 12 ILGDWDSPPPEERIVMVSVPTSP---ESDYARSNQPKEIESRVSDKETASAS 60 >At5g22840.1 68418.m02670 protein kinase family protein contains protein kinase domain, Pfam:PF00069 Length = 538 Score = 29.5 bits (63), Expect = 1.8 Identities = 14/51 (27%), Positives = 26/51 (50%) Frame = +1 Query: 298 VKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDGGVNEKPAN 450 VK +P P+ E S++ + + N+ K RKK K ++ NE+ ++ Sbjct: 206 VKDKAVPERPVEKEKPKSYTYSADLTKNQKKKIRKKAKKVEGSEENERDSS 256 >At3g59550.1 68416.m06646 cohesion family protein SYN3 (SYN3) nearly identical to cohesion family protein SYN3 [Arabidopsis thaliana] GI:12006362; supporting cDNA gi|12006361|gb|AF281155.1|AF281155 Length = 693 Score = 29.1 bits (62), Expect = 2.3 Identities = 12/31 (38%), Positives = 19/31 (61%) Frame = +1 Query: 277 SPPHETDVKINTIPPDPLTTEPTASHSTTPA 369 SP E +V+IN + P P +T P ++ +PA Sbjct: 449 SPTREAEVEINPVSPIPDSTNPDSTVQLSPA 479 >At3g23690.1 68416.m02979 basic helix-loop-helix (bHLH) family protein contains Pfam profile: PF00010 helix-loop-helix DNA-binding domain Length = 371 Score = 29.1 bits (62), Expect = 2.3 Identities = 19/59 (32%), Positives = 25/59 (42%), Gaps = 3/59 (5%) Frame = +1 Query: 325 PLTTEPTASHSTTPAIVDNKVPKKR---KKEKSIKDGGVNEKPANGEMKKDPSLVSANN 492 P T E S P V ++V + +K KSI G E PA+ + S VS N Sbjct: 87 PTTQESNKSSLLDPDSVSDRVHTTKSNSRKRKSIPSGNGKESPASSSLTASNSKVSGEN 145 >At1g79280.1 68414.m09242 expressed protein weak similarity to Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens] Length = 2111 Score = 29.1 bits (62), Expect = 2.3 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%) Frame = +1 Query: 265 SNWESPPHETDVKINT--IPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDGG 429 +N + ETD+K T P++T PT S + AI + P+ +++ GG Sbjct: 1987 ANDQQEAPETDIKPETSAATTSPVSTAPTTSSTLASAITSSGAPETEDPKRAPSPGG 2043 >At5g46840.1 68418.m05771 RNA recognition motif (RRM)-containing protein contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 501 Score = 28.7 bits (61), Expect = 3.1 Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 1/72 (1%) Frame = +1 Query: 295 DVKINTIPPDPLTTEPTASHSTTPAIVDNKVP-KKRKKEKSIKDGGVNEKPANGEMKKDP 471 ++K ++IP + + A + D V KK KKEK + D G +EK E ++ Sbjct: 52 EIKESSIPDEKKGDKRNAENEEEEEETDLPVKTKKSKKEKKLTDSG-DEKETISEAVEES 110 Query: 472 SLVSANNIKPGD 507 LVS + D Sbjct: 111 GLVSKRKKRKRD 122 >At5g40340.1 68418.m04894 PWWP domain-containing protein KED, Nicotiana tabacum, EMBL:AB009883 Length = 1008 Score = 28.7 bits (61), Expect = 3.1 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 3/54 (5%) Frame = +1 Query: 382 KVPKKRKKEKSIKDGGVNE---KPANGEMKKDPSLVSANNIKPGDATRRYHGNP 534 K +KRKK +S K+GG E K AN KK+ + + K D P Sbjct: 729 KKERKRKKSESKKEGGEGEETQKEANESTKKERKRKKSESKKQSDGEEETQKEP 782 >At2g46240.1 68415.m05750 IQ domain-containing protein / BAG domain-containing protein contains Pfam profiles PF00612: IQ calmodulin-binding motif, PF02179: BAG (Apoptosis regulator Bcl-2 protein) domain Length = 1043 Score = 28.3 bits (60), Expect = 4.1 Identities = 17/48 (35%), Positives = 24/48 (50%) Frame = +1 Query: 283 PHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDG 426 P ET+V +N P+P TEP S T + +N+ K E +K G Sbjct: 951 PLETEVILNEQAPEPEITEPGISKETKKLMEENQ-RFKETMETLVKAG 997 >At1g15280.2 68414.m01829 glycine-rich protein Length = 585 Score = 28.3 bits (60), Expect = 4.1 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Frame = +1 Query: 247 KHDAVLSNWESPPHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDG 426 +H AV+ + S P +T + N PPD + S S T A++ K + +++ G Sbjct: 387 QHSAVVRSLSSSPQKTSLSRNRYPPDEI-----ESSSETAALI-------AKGKGTLRPG 434 Query: 427 GVNEKPANGE--MKKDPSLVSANN 492 G + +G M + SL SA+N Sbjct: 435 GSSSFMYSGSQMMGRPESLTSADN 458 >At1g15280.1 68414.m01828 glycine-rich protein Length = 584 Score = 28.3 bits (60), Expect = 4.1 Identities = 24/84 (28%), Positives = 40/84 (47%), Gaps = 2/84 (2%) Frame = +1 Query: 247 KHDAVLSNWESPPHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDG 426 +H AV+ + S P +T + N PPD + S S T A++ K + +++ G Sbjct: 386 QHSAVVRSLSSSPQKTSLSRNRYPPDEI-----ESSSETAALI-------AKGKGTLRPG 433 Query: 427 GVNEKPANGE--MKKDPSLVSANN 492 G + +G M + SL SA+N Sbjct: 434 GSSSFMYSGSQMMGRPESLTSADN 457 >At3g44530.1 68416.m04786 transducin family protein / WD-40 repeat family protein contains 6 (4 significant) WD-40 repeats (PF0400); nuclear protein HIRA, mouse, PIR:S68141 Length = 1051 Score = 27.9 bits (59), Expect = 5.4 Identities = 15/48 (31%), Positives = 25/48 (52%) Frame = +1 Query: 322 DPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDGGVNEKPANGEMKK 465 D + ++P A +TTP +DN P + ++ D GV EK + + K Sbjct: 995 DQIGSDPPAMTATTPMTIDNDKPVSLENPAAL-DIGVCEKTGSEDRDK 1041 >At1g13030.1 68414.m01511 sphere organelles protein-related contains weak similarity to Swiss-Prot:Q09003 sphere organelles protein SPH-1 (Sphere protein 1) [Xenopus laevis] Length = 608 Score = 27.9 bits (59), Expect = 5.4 Identities = 16/45 (35%), Positives = 21/45 (46%) Frame = +1 Query: 331 TTEPTASHSTTPAIVDNKVPKKRKKEKSIKDGGVNEKPANGEMKK 465 TTE + A+V N V KK+KK KS+ N N + K Sbjct: 183 TTEESPDERENTAVVSNVVKKKKKK-KSLDVQSANNDEQNNDSTK 226 >At4g35510.1 68417.m05048 expressed protein Length = 333 Score = 27.5 bits (58), Expect = 7.1 Identities = 13/38 (34%), Positives = 21/38 (55%) Frame = +1 Query: 391 KKRKKEKSIKDGGVNEKPANGEMKKDPSLVSANNIKPG 504 KK+KK KS+ +GG + G MK +V +++ G Sbjct: 197 KKQKKNKSVVEGGSSSIIVTGSMKDIAGVVDSDSSYEG 234 >At4g26965.1 68417.m03880 NADH:ubiquinone oxidoreductase family protein contains Pfam profile PF05071: NADH:ubiquinone oxidoreductase 17.2 kD subunit Length = 184 Score = 27.5 bits (58), Expect = 7.1 Identities = 11/25 (44%), Positives = 18/25 (72%) Frame = +1 Query: 286 HETDVKINTIPPDPLTTEPTASHST 360 HE ++ ++ PP+P TTEP+ S S+ Sbjct: 151 HEPEI-VSAEPPEPKTTEPSGSGSS 174 >At1g75800.1 68414.m08805 pathogenesis-related thaumatin family protein similar to receptor serine/threonine kinase PR5K [Arabidopsis thaliana] GI:1235680; contains Pfam profile: PF00314 Thaumatin family Length = 330 Score = 27.5 bits (58), Expect = 7.1 Identities = 11/17 (64%), Positives = 12/17 (70%) Frame = +1 Query: 319 PDPLTTEPTASHSTTPA 369 PDP T PT + STTPA Sbjct: 262 PDPKPTTPTGTSSTTPA 278 >At5g55390.1 68418.m06901 hydroxyproline-rich glycoprotein family protein Length = 1332 Score = 27.1 bits (57), Expect = 9.4 Identities = 20/74 (27%), Positives = 31/74 (41%), Gaps = 2/74 (2%) Frame = +1 Query: 265 SNWESPPHETDVKINTIPPDPLTTEPTASHSTTPAIVDNKVPKKRKKEKSIKDGGVN-EK 441 S+W+SP + I + TT P SH A + K K+I++ G + Sbjct: 1067 SDWQSPVRSSPDDIYAVCTSISTTTPQRSHEAVEASLPAITRTKSNLGKNIREHGCKVQG 1126 Query: 442 PANGEMKKD-PSLV 480 E+ +D PS V Sbjct: 1127 TGKPEVSRDRPSSV 1140 >At5g24710.1 68418.m02919 WD-40 repeat family protein contains 3 Pfam PF00400: WD domain, G-beta repeats; Length = 1327 Score = 27.1 bits (57), Expect = 9.4 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +1 Query: 292 TDVKINTIPPDPLTTEPTASHSTT 363 T + T PP+P+TT P + +TT Sbjct: 1272 TPESVTTAPPEPITTAPPETVTTT 1295 >At1g68725.1 68414.m07853 arabinogalactan-protein, putative (AGP19) non-consensus splice site at the intron:exon boundary (AT:exon) Length = 247 Score = 27.1 bits (57), Expect = 9.4 Identities = 14/37 (37%), Positives = 16/37 (43%) Frame = +1 Query: 259 VLSNWESPPHETDVKINTIPPDPLTTEPTASHSTTPA 369 V S +PP T T P P TT P S + PA Sbjct: 32 VTSTTTAPPPTTAAPPTTAAPPPTTTTPPVSAAQPPA 68 >At1g35375.1 68414.m04387 hypothetical protein Length = 140 Score = 27.1 bits (57), Expect = 9.4 Identities = 11/25 (44%), Positives = 17/25 (68%) Frame = +3 Query: 174 QMTKNWSKHVERKLKRKNYLKSNWK 248 Q+ NW V++K+K++ LKS WK Sbjct: 19 QLFDNWPPMVQKKIKKEKVLKS-WK 42 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 11,617,676 Number of Sequences: 28952 Number of extensions: 222381 Number of successful extensions: 773 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 728 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 767 length of database: 12,070,560 effective HSP length: 77 effective length of database: 9,841,256 effective search space used: 1171109464 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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