Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0587
         (711 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    29   0.049
AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase ...    22   4.3  
AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase ...    22   4.3  
EF592537-1|ABQ95983.1|  593|Tribolium castaneum beta-N-acetylglu...    22   5.7  
EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine vasopre...    21   7.5  
EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2 p...    21   9.9  
AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve co...    21   9.9  
AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head orthol...    21   9.9  

>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 28.7 bits (61), Expect = 0.049
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +3

Query: 324 YAHTPGTTIELTCEAAGSPAPSVHWFKND 410
           +++T G  +E  C A G+P P + W ++D
Sbjct: 35  FSNTTGAVVE--CSAHGNPTPDIIWVRSD 61



 Score = 28.7 bits (61), Expect = 0.049
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 336 PGTTIELTCEAAGSPAPSVHW 398
           PG ++ L C A+G+P P + W
Sbjct: 427 PGNSVFLKCIASGNPTPEITW 447



 Score = 27.1 bits (57), Expect = 0.15
 Identities = 9/19 (47%), Positives = 12/19 (63%)
 Frame = +3

Query: 348 IELTCEAAGSPAPSVHWFK 404
           + L C A G P+PS  W+K
Sbjct: 250 VALLCPAQGFPSPSFRWYK 268



 Score = 25.4 bits (53), Expect = 0.46
 Identities = 8/27 (29%), Positives = 13/27 (48%)
 Frame = +3

Query: 339 GTTIELTCEAAGSPAPSVHWFKNDSPV 419
           G     TC   G+P  ++ W K+  P+
Sbjct: 342 GRPATFTCNFEGNPIKTISWLKDGHPI 368



 Score = 22.6 bits (46), Expect = 3.2
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +3

Query: 327 AHTPGTTIELTCEAAGSPAPSVHW 398
           A   G+   + C+A G P P V W
Sbjct: 709 AFAQGSDAAVECKADGFPRPVVTW 732



 Score = 21.8 bits (44), Expect = 5.7
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 339 GTTIELTCEAAGSPAPSVHW 398
           G T+ + C  AG P  SV W
Sbjct: 525 GGTLIVHCPFAGHPVDSVVW 544



 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = +3

Query: 348  IELTCEAAGSPAPSVHW 398
            + L C A G P P + W
Sbjct: 1324 VTLPCLAVGLPPPVITW 1340


>AY295879-1|AAQ62692.1| 1464|Tribolium castaneum chitin synthase
           protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 343 VPGVCAYDGRGPCVIDKYL 287
           VPGV A   R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215


>AY291477-1|AAQ55061.1| 1464|Tribolium castaneum chitin synthase
           CHS2 protein.
          Length = 1464

 Score = 22.2 bits (45), Expect = 4.3
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = -3

Query: 343 VPGVCAYDGRGPCVIDKYL 287
           VPGV A   R PC I++ L
Sbjct: 197 VPGVVAMFSRKPCSINENL 215


>EF592537-1|ABQ95983.1|  593|Tribolium castaneum
           beta-N-acetylglucosaminidase NAG2 protein.
          Length = 593

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/12 (66%), Positives = 11/12 (91%)
 Frame = +3

Query: 462 PTSIARISSTLI 497
           PTS+ +ISSTL+
Sbjct: 75  PTSVTKISSTLL 86


>EF222296-1|ABN79656.2|  403|Tribolium castaneum arginine
           vasopressin receptor protein.
          Length = 403

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 7/17 (41%), Positives = 10/17 (58%)
 Frame = -2

Query: 590 YLYCRPQCWLAQSWSSW 540
           Y+ C     LAQ W++W
Sbjct: 273 YIACSTPFILAQLWATW 289


>EF117815-1|ABO38438.1|  535|Tribolium castaneum cryptochrome 2
           protein.
          Length = 535

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 2/40 (5%)
 Frame = +3

Query: 258 GVQAKSDGSH--KYLSITQGPLPSYAHTPGTTIELTCEAA 371
           G +A  +G +  KYL + +     Y H P T  E    AA
Sbjct: 432 GRKADPNGDYIRKYLPVLKNMPSQYIHEPWTAPEQVQRAA 471


>AY695256-1|AAW21973.1|  168|Tribolium castaneum ventral nerve cord
           defective protein protein.
          Length = 168

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 7/15 (46%), Positives = 9/15 (60%)
 Frame = +1

Query: 658 HLRGQHRQQGGAPVP 702
           H +G H QQ   P+P
Sbjct: 100 HEKGMHDQQNNNPLP 114


>AF217810-1|AAF71998.1|  431|Tribolium castaneum fork head
           orthologue protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = +3

Query: 285 HKYLSITQGPLPSYAHTPGT 344
           H+Y   T  PLPS  H+  T
Sbjct: 392 HQYGYNTLSPLPSSVHSHST 411


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,726
Number of Sequences: 336
Number of extensions: 2900
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 18843005
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)