Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0587
         (711 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr ...    29   0.66 
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb...    27   2.6  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    27   3.5  
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe...    26   6.1  
SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family |Schizosa...    25   8.1  

>SPBC17D1.07c |||GTPase regulator |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 962

 Score = 29.1 bits (62), Expect = 0.66
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +1

Query: 109 LRESHQYYRAVVRMHLVLL 165
           L+ESHQ YR +V +HL LL
Sbjct: 297 LKESHQIYRKMVSLHLELL 315


>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 605

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +1

Query: 193 CQSAHLNKHIKLLSDIDNSIEMVCKQNL 276
           CQ+A ++KH K L+D D     +C+Q++
Sbjct: 131 CQAAQVSKHWKELADDDVIWHRMCEQHI 158


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.6 bits (56), Expect = 3.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +3

Query: 336 PGTTIELTCEAAGSPAPSVHWFKNDSP 416
           PG T + TC   GS   +V++ KN  P
Sbjct: 427 PGCTYDNTCSQRGSVIANVYFAKNKQP 453


>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 488

 Score = 25.8 bits (54), Expect = 6.1
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = -3

Query: 688 HPVADVVHVGAIGDHDARLQREQLSAFRELSSAIC 584
           H ++     GAI  HD R+   Q+   +  SS +C
Sbjct: 274 HVLSSGSRSGAIHHHDVRIANHQIGTLQGHSSEVC 308


>SPBC16H5.08c |||ribosome biogenesis ATPase, Arb family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -1

Query: 324 TTVGGLA*SINIYEIHQILLAHHFNTVIDVRKQL 223
           T++  LA +IN++    +L++H F  +  V K+L
Sbjct: 546 TSIDALAKAINVWTGGVVLVSHDFRLIGQVSKEL 579


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,603,645
Number of Sequences: 5004
Number of extensions: 49189
Number of successful extensions: 149
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 149
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 331187010
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)