Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0587
         (711 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g55200.1 68414.m06305 protein kinase family protein contains ...    32   0.43 
At3g13690.1 68416.m01729 protein kinase family protein contains ...    31   0.75 
At2g21630.1 68415.m02573 transport protein, putative similar to ...    31   1.00 
At3g23920.1 68416.m03005 beta-amylase, putative / 1,4-alpha-D-gl...    29   3.0  
At3g53930.1 68416.m05958 protein kinase family protein contains ...    28   7.0  

>At1g55200.1 68414.m06305 protein kinase family protein contains
           Pfam profile: PF00069 Eukaryotic protein kinase domain
          Length = 676

 Score = 31.9 bits (69), Expect = 0.43
 Identities = 14/53 (26%), Positives = 24/53 (45%)
 Frame = +1

Query: 163 LFTVAALLGSCQSAHLNKHIKLLSDIDNSIEMVCKQNLMDLINIYRSRKAPYR 321
           L+T     G C + H   H   +S+I + +   C Q ++ L ++Y   K   R
Sbjct: 62  LWTFPRFAGDCATGHWKLHSDPMSEIKSDLTDTCSQMILQLHDVYDPNKVNVR 114


>At3g13690.1 68416.m01729 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 753

 Score = 31.1 bits (67), Expect = 0.75
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 187 GSCQSAHLNKHIKLLSDIDNSIEMVCKQNLMDLINIYRSRK 309
           G C S H   H + L +I + +   C Q ++ L ++Y   K
Sbjct: 78  GDCASGHRKSHSEALPEIKSDLTDTCSQMILQLHDVYDPNK 118


>At2g21630.1 68415.m02573 transport protein, putative similar to
           Swiss-Prot:Q15436 protein transport protein Sec23A [Homo
           sapiens]
          Length = 761

 Score = 30.7 bits (66), Expect = 1.00
 Identities = 14/41 (34%), Positives = 20/41 (48%)
 Frame = +3

Query: 291 YLSITQGPLPSYAHTPGTTIELTCEAAGSPAPSVHWFKNDS 413
           Y S+    LP       TT+E  C++  SP+P V  F  D+
Sbjct: 95  YSSVADNNLPPELFPHSTTVEYLCDSFSSPSPPVFLFVVDT 135


>At3g23920.1 68416.m03005 beta-amylase, putative /
           1,4-alpha-D-glucan maltohydrolase, putative similar to
           beta-amylase enzyme [Arabidopsis thaliana] GI:6065749,
           beta-amylase PCT-BMYI from [Solanum tuberosum]; contains
           Pfam profile PF01373: Glycosyl hydrolase family 14
          Length = 575

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 15/40 (37%), Positives = 21/40 (52%)
 Frame = +2

Query: 578 YNTDSATELSERAKLFPLKPRIVVSYSTYVDNIGNRVVLP 697
           YN     EL E AK   LK + V+S+     N+G+ V +P
Sbjct: 161 YNWGGYNELLELAKKLGLKVQAVMSFHQCGGNVGDSVTIP 200


>At3g53930.1 68416.m05958 protein kinase family protein contains
           eukaryotic protein kinase domain, INTERPRO:IPR000719
          Length = 711

 Score = 27.9 bits (59), Expect = 7.0
 Identities = 15/51 (29%), Positives = 27/51 (52%)
 Frame = +3

Query: 324 YAHTPGTTIELTCEAAGSPAPSVHWFKNDSPVYEYDVESNELIDSSPTSIA 476
           Y    G  +++   ++GSP P  + FK+ SP  E+ ++ N    ++P  IA
Sbjct: 421 YVLISGPPVDIPSSSSGSPKPFNYPFKSHSPPVEF-IKRNVTNLTAPMPIA 470


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,684,647
Number of Sequences: 28952
Number of extensions: 262653
Number of successful extensions: 649
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 649
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1535986264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)