Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0585
         (693 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy...    29   0.84 
SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF...    28   1.5  
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy...    28   1.5  
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr...    27   2.6  
SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl cis-...    25   7.9  

>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1115

 Score = 28.7 bits (61), Expect = 0.84
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +1

Query: 4   LASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEKLTK 153
           L +   +S ++ LSQ K  ++ +TTS     D +S+  +   D+++ L K
Sbjct: 691 LLNEQIESLNDQLSQLKTEMESVTTSKESLADYLSNLKERHNDELDSLNK 740


>SPBC1709.18 |tif452|SPBC409.01|translation initiation factor eIF4E
           4F complex subunit |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 243

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/38 (36%), Positives = 16/38 (42%), Gaps = 5/38 (13%)
 Frame = +3

Query: 330 FFFNQARDSWMKPIPFFNGSWFH-----GSNLKALWLY 428
           +F    R  W  P     G W +     GSNL  LWLY
Sbjct: 121 YFLKGIRPEWEDPQNMNGGKWAYQSKHKGSNLDELWLY 158


>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1583

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = +1

Query: 40  LSQTKKSIDDITTSARRSMDDISSKAKS 123
           L   KKS DDITT  +R M+D  S  +S
Sbjct: 177 LCSPKKSKDDITTPKKRLMEDTYSPRES 204


>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 780

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 12/41 (29%), Positives = 22/41 (53%)
 Frame = -2

Query: 128 SVLFALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAELA 6
           +++  L     I LL  +++ S+    CDNN + +LQ  +A
Sbjct: 554 NIIDKLTSNEQISLLLKIIIPSLTTLACDNNGTHVLQKCIA 594


>SPBC16H5.05c |cyp7|cwf27|cyclophilin family peptidyl-prolyl
           cis-trans isomerase Cyp7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 463

 Score = 25.4 bits (53), Expect = 7.9
 Identities = 14/45 (31%), Positives = 24/45 (53%)
 Frame = +1

Query: 10  SSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEK 144
           +SA  S+DE   Q       + +S++  + +  S+ KS L D+EK
Sbjct: 267 TSAKVSSDEYARQVDTLDTKLNSSSKSKVQEEISRLKSELRDLEK 311


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,752,817
Number of Sequences: 5004
Number of extensions: 54338
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 151
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)