Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0585
         (693 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0040 + 20162923-20163255                                         32   0.50 
04_04_1343 - 32781101-32781364,32782470-32782791,32784346-32784740     30   2.0  
07_01_0276 + 2028983-2029070,2030084-2030151,2030317-2031246,203...    28   8.1  
04_04_1209 + 31755637-31755821,31756017-31756165,31756703-317568...    28   8.1  

>03_05_0040 + 20162923-20163255
          Length = 110

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 22/61 (36%), Positives = 34/61 (55%)
 Frame = -2

Query: 185 SSFQLLWVALALVNFSISSSVLFALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAELA 6
           +SF L+  ALA++  SIS +V   +  I S  L+A + +S I   +    S+V L AE+ 
Sbjct: 5   TSFVLVLSALAIMTISISVAVTIVISTIVSTILVARLSVSGIVLVLLLPPSAVQLVAEIV 64

Query: 5   S 3
           S
Sbjct: 65  S 65


>04_04_1343 - 32781101-32781364,32782470-32782791,32784346-32784740
          Length = 326

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 321 SLVFFFNQARDSWMKPIP 374
           SLVFFFN   D W++P+P
Sbjct: 263 SLVFFFNVHGDRWVEPLP 280


>07_01_0276 +
           2028983-2029070,2030084-2030151,2030317-2031246,
           2031334-2031415,2031544-2031609,2032606-2033304,
           2033422-2035424,2035599-2036173,2037060-2037223,
           2037306-2037365,2037475-2037839
          Length = 1699

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +2

Query: 8   QVQPVKVQMNYYHKQRSQLMTSQHQQEDQWMISHLKQKAHLM 133
           Q Q ++ QM    KQR QL+  + QQ+ Q ++    Q+ HL+
Sbjct: 881 QQQQMQQQMQQQQKQRLQLLQLEQQQQQQLLL----QQQHLL 918


>04_04_1209 +
           31755637-31755821,31756017-31756165,31756703-31756845,
           31756902-31757024
          Length = 199

 Score = 27.9 bits (59), Expect = 8.1
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -2

Query: 194 AYYSSFQLLWVALALVNFSISSSVLFALDEISSIDLLADVV 72
           A++ + + LW+    +  ++SSS++FA  E S   LL  ++
Sbjct: 53  AHHGNIERLWIEAPALTHALSSSLIFARIEDSEYALLRKIL 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,318,159
Number of Sequences: 37544
Number of extensions: 301117
Number of successful extensions: 728
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 727
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1768474200
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)