Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0585
(693 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_22203| Best HMM Match : 7tm_1 (HMM E-Value=8e-08) 29 2.7
SB_21913| Best HMM Match : C2 (HMM E-Value=0.31) 29 2.7
SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3) 29 2.7
SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08) 29 3.6
SB_14707| Best HMM Match : A_deamin (HMM E-Value=0) 29 4.7
SB_44718| Best HMM Match : ig (HMM E-Value=0.081) 28 6.2
SB_55624| Best HMM Match : PHD (HMM E-Value=3.8) 28 6.2
SB_43087| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2) 28 6.2
SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.2
SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05) 28 8.3
SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.3
>SB_22203| Best HMM Match : 7tm_1 (HMM E-Value=8e-08)
Length = 479
Score = 29.5 bits (63), Expect = 2.7
Identities = 11/31 (35%), Positives = 20/31 (64%)
Frame = -2
Query: 677 LFIVFLFGHTIFILDSVTESFVATLTALEII 585
+F+V FG+T ILD + +S + +T E++
Sbjct: 48 IFLVSFFGNTFLILDVIRKSTIIRVTTFELL 78
>SB_21913| Best HMM Match : C2 (HMM E-Value=0.31)
Length = 987
Score = 29.5 bits (63), Expect = 2.7
Identities = 20/55 (36%), Positives = 31/55 (56%)
Frame = -2
Query: 173 LLWVALALVNFSISSSVLFALDEISSIDLLADVVMSSIDFFVCDNNSSVLLQAEL 9
LLWVALALV F ++ AL S +D + +V ++ + D+ S L +A+L
Sbjct: 860 LLWVALALVQF--AAIYKDALKVFSRVD-FSIIVKDFLNSVITDSKSKALSRAKL 911
>SB_50648| Best HMM Match : Atrophin-1 (HMM E-Value=1.3)
Length = 1281
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/42 (30%), Positives = 24/42 (57%)
Frame = +1
Query: 22 KSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEKL 147
+++D+L K++ DD++ +R+ DD+S K DD L
Sbjct: 610 RASDDLSLPNKRASDDLSLPNKRASDDLSLPNKRASDDHPSL 651
Score = 29.1 bits (62), Expect = 3.6
Identities = 18/69 (26%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 22 KSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEKLTK-ANATQRS*KEE*YAC 198
K++D+ K++ DD++ +R+ DD+S K DD+ K A+ S +
Sbjct: 599 KASDDPSLPNKRASDDLSLPNKRASDDLSLPNKRASDDLSLPNKRASDDHPSLQNNADPA 658
Query: 199 LCNTYIENG 225
C++ I+ G
Sbjct: 659 RCDSQIQRG 667
>SB_37178| Best HMM Match : fn3 (HMM E-Value=4.7e-08)
Length = 961
Score = 29.1 bits (62), Expect = 3.6
Identities = 12/48 (25%), Positives = 25/48 (52%)
Frame = +1
Query: 31 DELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEKLTKANATQRS 174
D+ + KK+ +DI R + + K+ +++ ++ KA T+RS
Sbjct: 176 DQYVKDLKKAAEDIDLMIEREEEQVKQLTKAYREELTQIEKAFVTERS 223
>SB_14707| Best HMM Match : A_deamin (HMM E-Value=0)
Length = 1243
Score = 28.7 bits (61), Expect = 4.7
Identities = 15/37 (40%), Positives = 18/37 (48%)
Frame = +2
Query: 8 QVQPVKVQMNYYHKQRSQLMTSQHQQEDQWMISHLKQ 118
Q Q ++ Q +HKQ Q Q QQ Q I H KQ
Sbjct: 263 QRQQLQQQQIQHHKQHLQQQRQQRQQLQQQQIQHHKQ 299
>SB_44718| Best HMM Match : ig (HMM E-Value=0.081)
Length = 185
Score = 28.3 bits (60), Expect = 6.2
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = +1
Query: 595 SAVNVATNDSVTESKIKIVWPKRNTM 672
+ + +T DSVTE+ + +VW +R M
Sbjct: 50 NVTSTSTEDSVTENGVTLVWSRREQM 75
>SB_55624| Best HMM Match : PHD (HMM E-Value=3.8)
Length = 349
Score = 28.3 bits (60), Expect = 6.2
Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 4/44 (9%)
Frame = +1
Query: 520 DKCELDNYCVLCCG----NI*HKGWQIISSAVNVATNDSVTESK 639
D+CEL Y + CCG ++ H+ W ++S V + V +SK
Sbjct: 149 DECELHGYHMACCGILGEDVRHQ-WSRVASQGKVPLLEQVEQSK 191
>SB_43087| Best HMM Match : Ribosomal_S25 (HMM E-Value=3.2)
Length = 134
Score = 28.3 bits (60), Expect = 6.2
Identities = 16/41 (39%), Positives = 24/41 (58%)
Frame = +1
Query: 25 STDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEKL 147
ST+E L +T+K DD+ RR D I S+ K ++ ME +
Sbjct: 87 STEEELQKTRKERDDM----RREKDQIISELKFKIEHMESV 123
>SB_29194| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2916
Score = 28.3 bits (60), Expect = 6.2
Identities = 11/48 (22%), Positives = 26/48 (54%)
Frame = +1
Query: 1 ELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEK 144
E S ++ DE+ +++D+I + R++D+I LD++++
Sbjct: 1514 EADRSQSRALDEIDRNQSRALDEIDRNQSRALDEIDRNQSRALDEIDR 1561
>SB_28905| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 322
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/36 (36%), Positives = 23/36 (63%), Gaps = 3/36 (8%)
Frame = -2
Query: 680 FLFIVFLFGHTIFILDSVTESF---VATLTALEIIC 582
++F++FLF +T F+L S SF A++ + E +C
Sbjct: 240 WMFVIFLFCYTPFMLTSAVASFGTETASIWSAEALC 275
>SB_53243| Best HMM Match : Sec34 (HMM E-Value=9.9e-05)
Length = 530
Score = 27.9 bits (59), Expect = 8.3
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = +2
Query: 14 QPVKVQMNYYHKQRSQLMTSQHQQEDQWMI 103
+PVK ++ Y+KQ ++L+ + +ED +I
Sbjct: 486 KPVKTKVQEYYKQMNELIAETYTEEDSHII 515
>SB_49189| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1373
Score = 27.9 bits (59), Expect = 8.3
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 11 VQPVKVQMNYYHKQRSQLMTSQHQQEDQW 97
+QPV ++ YY+ R ++ QQ ++W
Sbjct: 585 LQPVTAKLPYYNDMREEVHDKYSQQREEW 613
>SB_5620| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 937
Score = 27.9 bits (59), Expect = 8.3
Identities = 19/72 (26%), Positives = 34/72 (47%)
Frame = -3
Query: 601 PRLKLFANLCARYFHNRVHNNYLIHIYQIIM*GINLHYYT*ESNASLFVIIINS*LSLYS 422
PRL+L + + FH H + I + +M G N+ Y S +LF I + ++
Sbjct: 585 PRLRLTGIIFSLGFHGANHFLFKIGTFPWLMIGSNVIYLEENSVENLFQAIKKKVYNSFT 644
Query: 421 HNALRLEPWNHE 386
+N ++E + E
Sbjct: 645 NNISKMETKSKE 656
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,569,656
Number of Sequences: 59808
Number of extensions: 382135
Number of successful extensions: 1020
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 845
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1010
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1805522550
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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