Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0585
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter...    23   2.8  
DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated...    22   6.4  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    21   8.4  

>AF144379-1|AAD34586.1|  543|Apis mellifera glutamate transporter
           Am-EAAT protein.
          Length = 543

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = -2

Query: 689 AIQFLFIVFLFGHTIFILDSVTESFVATLTAL 594
           A+  +FI  + G ++ I + +T SF ATL ++
Sbjct: 405 AVAAIFIAQMNGISLGIGEVITVSFTATLASI 436


>DQ667194-1|ABG75746.1|  391|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 391

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)
 Frame = +2

Query: 5   LQVQPVKVQMNYYHKQRSQL 64
           +Q+ P+ ++   YHKQ+ +L
Sbjct: 127 IQICPIYIESFSYHKQKLRL 146


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -1

Query: 273 MMNKLGPNEHGRSL 232
           M++ +GP EH RSL
Sbjct: 331 MLSGIGPKEHLRSL 344


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 183,767
Number of Sequences: 438
Number of extensions: 3625
Number of successful extensions: 17
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)