Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0585
(693 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At4g35210.1 68417.m05004 hypothetical protein contains Pfam prof... 30 1.3
At4g24790.1 68417.m03550 expressed protein ; expression supporte... 30 1.7
At1g10220.1 68414.m01152 hypothetical protein 29 2.2
At5g23060.1 68418.m02696 expressed protein 29 2.9
At5g67240.1 68418.m08475 exonuclease family protein contains exo... 29 3.9
At5g38400.1 68418.m04642 hypothetical protein 28 5.1
At4g27595.1 68417.m03964 protein transport protein-related low s... 28 5.1
At5g35390.1 68418.m04206 leucine-rich repeat transmembrane prote... 28 6.8
At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG) co... 28 6.8
At4g13560.1 68417.m02113 late embryogenesis abundant domain-cont... 28 6.8
At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containi... 27 8.9
At3g05830.1 68416.m00654 expressed protein 27 8.9
At2g17070.1 68415.m01971 expressed protein contains Pfam profile... 27 8.9
At1g69980.1 68414.m08054 expressed protein 27 8.9
>At4g35210.1 68417.m05004 hypothetical protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function
Length = 250
Score = 30.3 bits (65), Expect = 1.3
Identities = 15/46 (32%), Positives = 26/46 (56%)
Frame = +1
Query: 19 CKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEKLTKA 156
C + + LSQ K+S+ +I + RR D+S++ K L + L K+
Sbjct: 87 CSISKDGLSQMKESLKEIQSIVRRKRGDLSAEVKKYLASRKFLKKS 132
>At4g24790.1 68417.m03550 expressed protein ; expression supported
by MPSS
Length = 815
Score = 29.9 bits (64), Expect = 1.7
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = -2
Query: 203 QRHAYYSSFQLLWVALALVNFSISSSVLFALDEISSIDLLADVVMSS 63
++H S Q W+ +AL+ S + S FA DE + DV +SS
Sbjct: 567 EKHLRASKNQTTWLTVALLQLSNTDSSSFATDENGRNQINKDVELSS 613
>At1g10220.1 68414.m01152 hypothetical protein
Length = 267
Score = 29.5 bits (63), Expect = 2.2
Identities = 14/42 (33%), Positives = 19/42 (45%)
Frame = +1
Query: 43 SQTKKSIDDITTSARRSMDDISSKAKSTLDDMEKLTKANATQ 168
SQ K +DD + +DD K K LDD T++ Q
Sbjct: 78 SQKKDVLDDFKVKKKDVLDDFKVKNKDVLDDFNVKTESKTEQ 119
>At5g23060.1 68418.m02696 expressed protein
Length = 387
Score = 29.1 bits (62), Expect = 2.9
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +1
Query: 13 SACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTL 129
+A K+ ++ QT K+I+D A +MD ISS S +
Sbjct: 151 NAAKTVTDVAQQTSKAIEDAKPIASSTMDTISSADPSVI 189
>At5g67240.1 68418.m08475 exonuclease family protein contains
exonuclease domain, Pfam:PF00929
Length = 745
Score = 28.7 bits (61), Expect = 3.9
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = +1
Query: 73 TTSARRSMDDISSKAKSTLDDMEKLTKANATQR 171
T AR ++SSK + T D+ E+ +ANA QR
Sbjct: 534 TKRARTEESNMSSKRQKTEDESEETKEANAKQR 566
>At5g38400.1 68418.m04642 hypothetical protein
Length = 151
Score = 28.3 bits (60), Expect = 5.1
Identities = 18/72 (25%), Positives = 36/72 (50%)
Frame = +2
Query: 23 KVQMNYYHKQRSQLMTSQHQQEDQWMISHLKQKAHLMIWKN*LKLMPPRGAEKRSNMHAS 202
+V Y K+R++ + + +Q + + KA + ++K +K +PP+ K+S M S
Sbjct: 10 RVSAVYEGKERNRSSNGEETRREQSKHARMTAKARMNVYKESMKPLPPK--RKKSLMIIS 67
Query: 203 AIHISKTDCTND 238
+ K D +D
Sbjct: 68 LMR-KKEDTQDD 78
>At4g27595.1 68417.m03964 protein transport protein-related low
similarity to SP|P25386 Intracellular protein transport
protein USO1 {Saccharomyces cerevisiae}
Length = 1212
Score = 28.3 bits (60), Expect = 5.1
Identities = 14/49 (28%), Positives = 25/49 (51%)
Frame = +1
Query: 22 KSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEKLTKANATQ 168
+ T E L + + I+ + +++DD+ K T + EKL +A A Q
Sbjct: 91 QQTQEDLRKANEQIERLKKDKAKALDDLKESEKLTKEANEKLREALAAQ 139
>At5g35390.1 68418.m04206 leucine-rich repeat transmembrane protein
kinase, putative receptor-like protein kinase PRK1,
Lycopersicon esculentum, PIR:T07865
Length = 657
Score = 27.9 bits (59), Expect = 6.8
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = -1
Query: 225 SVFDICIAEACILLLFSAPLGGISFS 148
SV+++ + C+LL FS P G+S S
Sbjct: 10 SVYNVMVPLVCLLLFFSTPTHGLSDS 35
>At4g32551.1 68417.m04633 WD-40 repeat family protein (LEUNIG)
contains seven G-protein beta WD-40 repeats; beta
transducin-like protein, Podospora anserina, gb:L28125;
contains Pfam profiles PF04503: Single-stranded DNA
binding protein, SSDP; PF00400:WD domain, G-beta repeat;
identical to cDNA LEUNIG (LEUNIG) GI:11141604
Length = 931
Score = 27.9 bits (59), Expect = 6.8
Identities = 12/37 (32%), Positives = 19/37 (51%)
Frame = +2
Query: 8 QVQPVKVQMNYYHKQRSQLMTSQHQQEDQWMISHLKQ 118
Q Q + Q +++H+Q+ Q Q QQ+ Q H Q
Sbjct: 123 QQQQQQQQQHHHHQQQQQQQQQQQQQQQQQQQQHQNQ 159
>At4g13560.1 68417.m02113 late embryogenesis abundant
domain-containing protein / LEA domain-containing
protein similar to LEA protein [Cicer arietinum]
GI:2909420; contains Pfam profile PF02987: Late
embryogenesis abundant protein
Length = 109
Score = 27.9 bits (59), Expect = 6.8
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 1 ELASSACKSTDELLSQTKKSIDDITTSAR-RSMDDISSKAKSTLDDMEK 144
+ A SAC T +L + D+T SAR ++ D S KS + E+
Sbjct: 28 QTAQSACDKTADLTQSARDKAADLTQSARDKTADGSHSANKSAQHNQEQ 76
>At4g08840.1 68417.m01453 pumilio/Puf RNA-binding domain-containing
protein contains similarity to RNA binding protein PufA
[Dictyostelium discoideum] gi|5106561|gb|AAD39751
Length = 524
Score = 27.5 bits (58), Expect = 8.9
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = -1
Query: 315 NYATTFIVIK*IMSMMNKLGPNEHGRSLVQSVFDICIAE 199
N+ I+ K +++ + +LG + G L+Q + ++C E
Sbjct: 267 NFVDVMIIFKEVINNVIELGTDPFGNYLIQKLIEVCNEE 305
>At3g05830.1 68416.m00654 expressed protein
Length = 336
Score = 27.5 bits (58), Expect = 8.9
Identities = 17/63 (26%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
Frame = +1
Query: 1 ELASSACKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEK-LTKANATQRS* 177
E ++ + +ST S K+ +DD T S R +D ++ LDD+++ L+ +++
Sbjct: 112 EASADSAQSTKIQCSMLKQQLDDKTRSL-REQEDRMTQLGHQLDDLQRGLSLRECSEKQL 170
Query: 178 KEE 186
+EE
Sbjct: 171 REE 173
>At2g17070.1 68415.m01971 expressed protein contains Pfam profile
PF03087: Arabidopsis protein of unknown function;
expression supported by MPSS
Length = 263
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/45 (28%), Positives = 22/45 (48%)
Frame = +1
Query: 19 CKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEKLTK 153
C + + LSQ K+ + +I + RR D+S + K L + K
Sbjct: 94 CNISKDALSQMKEGLMEIQSILRRKRGDLSGEVKKYLASRKSFKK 138
>At1g69980.1 68414.m08054 expressed protein
Length = 205
Score = 27.5 bits (58), Expect = 8.9
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +1
Query: 19 CKSTDELLSQTKKSIDDITTSARRSMDDISSKAKSTLDDMEKLTKANA 162
CK E + KK+ ++ T + + + +D +K ++ LDD TK +
Sbjct: 95 CKEVREEVDAHKKNGEEETQNDQSNNNDEEAKTRNLLDDSSPATKVKS 142
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,850,292
Number of Sequences: 28952
Number of extensions: 265136
Number of successful extensions: 700
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 673
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 700
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1477286152
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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