Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0584
         (730 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces po...    31   0.22 
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    29   0.90 
SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|ch...    28   1.6  
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo...    27   2.1  
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF...    27   2.1  
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    27   3.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.6  
SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces pombe...    27   3.6  
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    26   6.3  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    25   8.4  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   8.4  
SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|c...    25   8.4  

>SPAC30D11.04c |nup124||nucleoporin Nup124|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1159

 Score = 30.7 bits (66), Expect = 0.22
 Identities = 23/67 (34%), Positives = 33/67 (49%), Gaps = 1/67 (1%)
 Frame = +2

Query: 338  GTRAHAARTYAPARS-SARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCYARLQ 514
            GT    A ++  A S +  + TAPAA+  A  P+TSA  S  A+ S  +       A+  
Sbjct: 927  GTSNKPAFSFGSATSKTTSEGTAPAASASAPAPTTSA-FSFGASNSSMNKEENTPMAKDA 985

Query: 515  EDTSPVS 535
             DT+P S
Sbjct: 986  GDTAPAS 992


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 28.7 bits (61), Expect = 0.90
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
 Frame = +1

Query: 148 SPVGTP--QPPAIPNQVSPPGPIPTQTFTNQHYVQLPGVES 264
           SP+GT     PAI  QV+P  P P  T   +H+   P V S
Sbjct: 711 SPMGTGAVNSPAIKPQVTPAPPTPAPTPAVKHHPPPPPVRS 751


>SPBC3E7.06c |||membrane transporter|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 577

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 146 TVR*AHHNRPRFLIKYRHLDLSQLRLLPINI 238
           T+   HHN   F+ ++R +DL  L LL I +
Sbjct: 263 TLNLPHHNHVSFMTRFRKIDLKGLILLIIGV 293


>SPAC17C9.03 |tif471||translation initiation factor eIF4G
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1403

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 12/40 (30%), Positives = 22/40 (55%)
 Frame = +2

Query: 371 PARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGT 490
           P  S++  +T+PA      +PST   T+  AT++ + S +
Sbjct: 233 PTTSASNTNTSPANGAPTNKPSTDINTTDPATQTTQVSAS 272


>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
           XPF|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 892

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 13/37 (35%), Positives = 22/37 (59%)
 Frame = -3

Query: 584 LDSVHLFCNRLLYRSRAKPAKYLLADGRNRGVYQSRD 474
           LD++ L  N   Y S A+P+ +L+ D  N+ +  +RD
Sbjct: 304 LDTLVLSVNVSSYPSNAQPSPWLMLDAANKMIRVARD 340


>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 23/68 (33%), Positives = 34/68 (50%), Gaps = 1/68 (1%)
 Frame = +1

Query: 22  LPPITLQEVEHAYFAQQYPQQRPITEVIGSQNFFFLQES-EIDSPVGTPQPPAIPNQVSP 198
           LP  T + VE A FA+Q P +    E   S     +QE+ E  + VG      + N+V+ 
Sbjct: 368 LPHPTAETVEIARFAEQ-PVRAQQPEQYESS---VVQEATETVTDVGKGVSSTVKNEVNV 423

Query: 199 PGPIPTQT 222
           P  IPT++
Sbjct: 424 PSTIPTES 431


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 16/44 (36%), Positives = 18/44 (40%), Gaps = 1/44 (2%)
 Frame = +1

Query: 151 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPGVESR-NLAA 279
           P   P PPA P    PP P P          +LP  + R NL A
Sbjct: 464 PAAPPLPPAAP--APPPAPAPAPAAPVASIAELPQQDGRANLMA 505


>SPBC336.06c |rnh1||ribonuclease H Rnh1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 264

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 533 KPAKYLLADGRNRGVYQSRDES 468
           K A Y +A GRN G+Y + DE+
Sbjct: 5   KRAYYAVARGRNTGIYSTWDEA 26


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 136 SEIDSPVGTPQPPAIPNQVSPPGPIPTQTFT 228
           + + S V  P PPA P+Q  PP P PT   T
Sbjct: 264 NNLGSQVNIPPPPATPSQ--PPRP-PTNAST 291


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/41 (26%), Positives = 19/41 (46%)
 Frame = +1

Query: 163 PQPPAIPNQVSPPGPIPTQTFTNQHYVQLPGVESRNLAACP 285
           P PP++ +   P GP P  +++N      P   + + A  P
Sbjct: 48  PPPPSVDHSAPPSGPPP--SYSNSAAPATPAASASSAAPAP 86


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 1/60 (1%)
 Frame = +1

Query: 97  EVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSP-PGPIPTQTFTNQHYVQLPGVESRNL 273
           EV   Q+    +  ++      P P   PNQ +P P    +  +  QH+ Q P +++RN+
Sbjct: 195 EVFNQQSKETKKSLQVPPSRNVPPPVTRPNQYNPEPNFSLSSGYPQQHFSQ-PELQNRNV 253


>SPCC417.09c |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 767

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +3

Query: 201 WTYPNSDFYQS 233
           WTYP S FYQ+
Sbjct: 362 WTYPGSQFYQN 372


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,624
Number of Sequences: 5004
Number of extensions: 48909
Number of successful extensions: 191
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 191
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 343230174
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)