Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0584
(730 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042) 37 0.015
SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.015
SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.) 35 0.059
SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.41
SB_25350| Best HMM Match : Collagen (HMM E-Value=0) 31 0.96
SB_36777| Best HMM Match : VWA (HMM E-Value=0) 31 0.96
SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09) 30 1.7
SB_11628| Best HMM Match : DUF1014 (HMM E-Value=0.64) 30 1.7
SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29) 29 2.9
SB_31880| Best HMM Match : I-set (HMM E-Value=0.082) 29 2.9
SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09) 29 3.9
SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.1
SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65) 28 6.7
SB_19226| Best HMM Match : I-set (HMM E-Value=0) 28 6.7
SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9) 28 6.7
SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2) 28 6.7
SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.7
SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2) 28 8.9
SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.9
SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18) 28 8.9
SB_46961| Best HMM Match : DUF663 (HMM E-Value=0) 28 8.9
SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45) 28 8.9
>SB_52986| Best HMM Match : zf-C2H2 (HMM E-Value=0.0042)
Length = 623
Score = 37.1 bits (82), Expect = 0.015
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +1
Query: 133 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGVESRNLAACPCR-LS 297
+S ++S P PP IP + SPPG PIPTQ N HY LPG ++ L P + LS
Sbjct: 358 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSKTPLLTHVPSKPLS 413
Query: 298 LIFH 309
+ H
Sbjct: 414 VTEH 417
>SB_48401| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 694
Score = 37.1 bits (82), Expect = 0.015
Identities = 27/64 (42%), Positives = 35/64 (54%), Gaps = 5/64 (7%)
Frame = +1
Query: 133 ESEIDSPVGTPQPPAIPNQVSPPG----PIPTQTFTNQHYVQLPGVESRNLAACPCR-LS 297
+S ++S P PP IP + SPPG PIPTQ N HY LPG ++ L P + LS
Sbjct: 325 KSSLESAPRKPSPP-IPEE-SPPGAMAAPIPTQD--NNHYPSLPGSKTPLLTHVPSKPLS 380
Query: 298 LIFH 309
+ H
Sbjct: 381 VTEH 384
>SB_11347| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1234
Score = 35.1 bits (77), Expect = 0.059
Identities = 26/96 (27%), Positives = 43/96 (44%)
Frame = +2
Query: 335 TGTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCYARLQ 514
+G + ++T P + +QST P A H RR ST R+ +++ S SG R +
Sbjct: 1093 SGPVSLTSKTPGPVSLTTKQSTKPEAKKHKRRSSTPERSDSDSSVS---SGPSKKQRRGR 1149
Query: 515 EDTSPVSPVTDKEDDCRKDGPSPELENGGDRKGDSQ 622
E + V P +KD E + +G+S+
Sbjct: 1150 ESPTEVPPSFRNTTRNKKDAGGSPSEQATNSRGNSR 1185
>SB_53582| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 393
Score = 32.3 bits (70), Expect = 0.41
Identities = 25/100 (25%), Positives = 36/100 (36%), Gaps = 4/100 (4%)
Frame = +1
Query: 1 PGYPLRPLPPITLQEVEHAYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPV----GTPQ 168
P P P PPITL +H +P P + ++++ V P
Sbjct: 111 PPPPPPPPPPITLHHEQHVVSHVMHPAPPPPPPPPPAPCMPPCHQTQVVHSVQLHASPPG 170
Query: 169 PPAIPNQVSPPGPIPTQTFTNQHYVQLPGVESRNLAACPC 288
PP P PP +P+ H+V P +A PC
Sbjct: 171 PPPAPMPAPPPMVVPSHRHV-FHHVTHPAPPPMQMAPAPC 209
>SB_25350| Best HMM Match : Collagen (HMM E-Value=0)
Length = 1112
Score = 31.1 bits (67), Expect = 0.96
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +1
Query: 151 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPG 255
P+G P +P PPGP P TF + H+ Q G
Sbjct: 898 PMGPMGDPGLPGPPGPPGP-PVSTFYHHHHHQHHG 931
>SB_36777| Best HMM Match : VWA (HMM E-Value=0)
Length = 1303
Score = 31.1 bits (67), Expect = 0.96
Identities = 17/69 (24%), Positives = 32/69 (46%)
Frame = +1
Query: 7 YPLRPLPPITLQEVEHAYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPN 186
YP+R + ++ + +YF Q + + + +Q + ++ + V TP P +PN
Sbjct: 1209 YPIR----MGARKGDTSYFRGQISCMQVYDKPLNAQQIVYARDICDNLQVSTPSPSLVPN 1264
Query: 187 QVSPPGPIP 213
V P P P
Sbjct: 1265 PVPQPAPAP 1273
>SB_39205| Best HMM Match : Neur_chan_LBD (HMM E-Value=1.5e-09)
Length = 1084
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 2/44 (4%)
Frame = +1
Query: 340 HPCP--CRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCN 465
HPCP C + T L P I P C+ + P H+ P+ +C+
Sbjct: 320 HPCPLPCFEECKPCTELLPKII-PECQHEQQVPCHIDPWEFKCS 362
>SB_11628| Best HMM Match : DUF1014 (HMM E-Value=0.64)
Length = 423
Score = 30.3 bits (65), Expect = 1.7
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 172 PAIPNQVSPPGPIPTQTFTNQHYVQLPGVESRN 270
P P V P P + T+ Y+Q+PGV +N
Sbjct: 291 PVAPTMVKEPQESPQKLSTSLPYIQMPGVTGKN 323
>SB_56087| Best HMM Match : Extensin_2 (HMM E-Value=0.29)
Length = 403
Score = 29.5 bits (63), Expect = 2.9
Identities = 21/72 (29%), Positives = 30/72 (41%), Gaps = 1/72 (1%)
Frame = +1
Query: 1 PGYPLRPLPPITLQ-EVEHAYFAQQYPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPA 177
P YP +P P IT + H + YP +P+ + S + LQ S P+ P
Sbjct: 87 PSYPYKPFPRITTSPSLVHLQASPSYP-YKPLPRIPTSLSLISLQASPSYPYKPLPRIPT 145
Query: 178 IPNQVSPPGPIP 213
P P P+P
Sbjct: 146 SPPSY-PYKPLP 156
>SB_31880| Best HMM Match : I-set (HMM E-Value=0.082)
Length = 301
Score = 29.5 bits (63), Expect = 2.9
Identities = 18/58 (31%), Positives = 29/58 (50%), Gaps = 1/58 (1%)
Frame = +2
Query: 374 ARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTS-PVSPVT 544
+ SS ++T P+ AC++ S R +HN R++ L + + T P SPVT
Sbjct: 143 SNSSRNKTTNPSIACNSPSSYLSNRQTHNQDWLRKNDTQFLAVEAVMKFTGWPSSPVT 200
>SB_105| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2982
Score = 29.1 bits (62), Expect = 3.9
Identities = 18/74 (24%), Positives = 32/74 (43%)
Frame = +2
Query: 398 TAPAAACHARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSPVSPVTDKEDDCRKDGP 577
+ P+++C R + H R GT + + +S SP+ DK+ + G
Sbjct: 947 STPSSSCSNARDRDTRAQRHQTLRRTSSIGTPRKKSFARGHSSVASPIRDKKTRRERSGT 1006
Query: 578 SPELENGGDRKGDS 619
P + G+R G+S
Sbjct: 1007 RP---SPGERTGES 1017
>SB_54595| Best HMM Match : Sec7 (HMM E-Value=7.7e-09)
Length = 918
Score = 29.1 bits (62), Expect = 3.9
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +1
Query: 355 RPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCN 465
+PYLRT TV P + + +L RT L P C+
Sbjct: 324 KPYLRTFTVADPKVQLYQAKLHRTASAPLGPQRISCS 360
>SB_45305| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 593
Score = 28.7 bits (61), Expect = 5.1
Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +1
Query: 40 QEVEHAYFAQQYPQQRPITEVIGSQ-NFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPT 216
++V+H QQ +P SQ NF F Q + + P P + Q P P PT
Sbjct: 117 EQVKHVQHLQQQIALQPQLNGYPSQINFSFPQTAAVTLPQQIQHPTQLSQQPQQPDPPPT 176
>SB_24967| Best HMM Match : Drf_FH1 (HMM E-Value=0.65)
Length = 1799
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/73 (26%), Positives = 29/73 (39%), Gaps = 7/73 (9%)
Frame = +2
Query: 362 TYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSG-------TRLCYARLQED 520
+Y+P + RQ P+ RTSHN + DSG + Y+R +
Sbjct: 1571 SYSPGKHQRRQGHKERIIASQNSPAAKIRTSHN--KEPNDSGPAWFYPVSNKHYSRPSDS 1628
Query: 521 TSPVSPVTDKEDD 559
S + P + DD
Sbjct: 1629 ESMIQPANLRRDD 1641
>SB_19226| Best HMM Match : I-set (HMM E-Value=0)
Length = 1500
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Frame = +1
Query: 352 CRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNP--LSSRLWYTPLLRP 507
C PY + +L P+ P P H PY C+P S+R+ PL+ P
Sbjct: 181 CSPYYTSTRMLTVPLITPLPVFYLFPLSHQYPY-ANCSPYYTSTRMLTVPLITP 233
>SB_1330| Best HMM Match : Phage_Coat_Gp8 (HMM E-Value=1.9)
Length = 482
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/46 (36%), Positives = 24/46 (52%)
Frame = +2
Query: 338 GTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSR 475
G R A+ Y ARS ++ +A AA R AR+ +A+RSR
Sbjct: 236 GPRGRAS--YRSARSGRQRDSARKAAAGGRTADQGARSGDSASRSR 279
>SB_7731| Best HMM Match : Extensin_2 (HMM E-Value=1.2)
Length = 352
Score = 28.3 bits (60), Expect = 6.7
Identities = 15/36 (41%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = +1
Query: 148 SPVGT-PQPPAIPNQVSPPGPIPTQTFTNQHYVQLP 252
+P G P PPA P + PP P P TF N + P
Sbjct: 192 APPGVLPPPPAPPGALIPPPPAP-PTFNNNQNMGYP 226
>SB_6450| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 692
Score = 28.3 bits (60), Expect = 6.7
Identities = 22/82 (26%), Positives = 39/82 (47%), Gaps = 1/82 (1%)
Frame = +2
Query: 326 RVCTGTRAHAA-RTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCY 502
R GT + ++ ++ P RSS ST RPS++++ S++ TRS +
Sbjct: 19 RAKKGTSSTSSPKSSRPGRSSLASSTDSITQTSNARPSSASKPSNSRTRSASVENLDM-- 76
Query: 503 ARLQEDTSPVSPVTDKEDDCRK 568
LQ+ V + +K+ + RK
Sbjct: 77 -SLQQRRDKVKQMREKQAEERK 97
>SB_41214| Best HMM Match : Gag_spuma (HMM E-Value=2)
Length = 454
Score = 27.9 bits (59), Expect = 8.9
Identities = 21/65 (32%), Positives = 27/65 (41%)
Frame = +1
Query: 307 HRIQSMQGLHRHPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNPLSSRLW 486
H +SM + P PC L T +L P YRP ++ P P T P W
Sbjct: 98 HAYRSMGTVPLVPSPCYRPLVTVPLLPSPGYRPMGTVALVPSSCYRPLGTV--PWVPSPW 155
Query: 487 YTPLL 501
Y PL+
Sbjct: 156 YRPLV 160
>SB_33678| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1308
Score = 27.9 bits (59), Expect = 8.9
Identities = 14/40 (35%), Positives = 18/40 (45%)
Frame = +1
Query: 388 PPIYRPRCRLSRTPPLHLSPYITQCNPLSSRLWYTPLLRP 507
P Y+P S P+ L PY T P+SS + P P
Sbjct: 887 PASYQPSAPSSMPAPVPLQPYNTPMPPISSTPYQAPPTLP 926
>SB_9456| Best HMM Match : OTU (HMM E-Value=3.1e-18)
Length = 1311
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 187 QVSPPGPIPTQTFTNQHYVQLPGVESRNLAACP 285
Q+ PP I + + HY+ L GV R + CP
Sbjct: 303 QLYPPLVIAWSSAGHNHYIPLVGVSGRPIPKCP 335
>SB_46961| Best HMM Match : DUF663 (HMM E-Value=0)
Length = 491
Score = 27.9 bits (59), Expect = 8.9
Identities = 17/47 (36%), Positives = 21/47 (44%)
Frame = -3
Query: 650 RRDRNVCIDSGSLPYGRHRSLTLDSVHLFCNRLLYRSRAKPAKYLLA 510
RR + + + S GRHR L HL C +Y A P LLA
Sbjct: 81 RRYQTIALYSMQDHNGRHRLLKYTPEHLHCISTMYGPIAPPGTGLLA 127
>SB_40962| Best HMM Match : COLFI (HMM E-Value=1.4013e-45)
Length = 577
Score = 27.9 bits (59), Expect = 8.9
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 154 VGTPQPPAIPNQVSPPGPIPTQ 219
+G+ PP +P +V PGPI Q
Sbjct: 49 MGSKGPPGVPGEVGKPGPIGYQ 70
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,476,239
Number of Sequences: 59808
Number of extensions: 442016
Number of successful extensions: 2079
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2044
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1949964354
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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