Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0584
(730 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family... 33 0.15
At1g69600.1 68414.m08005 zinc finger homeobox family protein / Z... 31 0.59
At4g07500.1 68417.m01161 hypothetical protein 31 1.0
At5g14540.1 68418.m01704 proline-rich family protein contains pr... 30 1.8
At4g03830.1 68417.m00534 myosin heavy chain-related 29 2.4
At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) famil... 29 2.4
At4g20700.1 68417.m03008 hypothetical protein 29 3.2
At3g61150.1 68416.m06843 homeobox-leucine zipper family protein ... 29 3.2
At2g20690.1 68415.m02429 lumazine-binding family protein SP|P508... 29 3.2
At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3) ident... 29 4.2
At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3) ident... 29 4.2
At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3) ident... 29 4.2
At2g28440.1 68415.m03455 proline-rich family protein contains pr... 29 4.2
At4g16140.1 68417.m02445 proline-rich family protein contains pr... 28 5.5
At3g13300.1 68416.m01674 transducin family protein / WD-40 repea... 28 5.5
At5g48360.1 68418.m05975 formin homology 2 domain-containing pro... 28 7.3
At4g30820.2 68417.m04368 cyclin-dependent kinase-activating kina... 28 7.3
At4g30820.1 68417.m04367 cyclin-dependent kinase-activating kina... 28 7.3
At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family... 28 7.3
At3g45120.1 68416.m04870 hypothetical protein 28 7.3
At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibit... 28 7.3
At3g21215.1 68416.m02681 RNA-binding protein, putative contains ... 28 7.3
At2g09865.1 68415.m01022 hypothetical protein 28 7.3
At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family... 27 9.6
At4g10640.1 68417.m01738 calmodulin-binding family protein conta... 27 9.6
At3g20570.1 68416.m02604 plastocyanin-like domain-containing pro... 27 9.6
At2g28970.1 68415.m03524 leucine-rich repeat protein kinase, put... 27 9.6
At2g18470.1 68415.m02151 protein kinase family protein contains ... 27 9.6
At1g01010.1 68414.m00001 no apical meristem (NAM) family protein... 27 9.6
>At1g53645.1 68414.m06102 hydroxyproline-rich glycoprotein family
protein
Length = 523
Score = 33.5 bits (73), Expect = 0.15
Identities = 19/45 (42%), Positives = 23/45 (51%)
Frame = +1
Query: 76 PQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPI 210
PQQ+P E GS F LQE + D+ P P + P Q PP I
Sbjct: 160 PQQQPNDESQGSPVFVKLQEMQ-DATSSPPPPESKPGQADPPDNI 203
>At1g69600.1 68414.m08005 zinc finger homeobox family protein /
ZF-HD homeobox family protein
Length = 242
Score = 31.5 bits (68), Expect = 0.59
Identities = 19/47 (40%), Positives = 22/47 (46%)
Frame = +1
Query: 109 SQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQL 249
S+N FL I SP GT PP+ VS P P T H+V L
Sbjct: 84 SENLNFLTAPPISSPSGTESPPS--RHVSSPVPCSYYTSAPPHHVIL 128
>At4g07500.1 68417.m01161 hypothetical protein
Length = 239
Score = 30.7 bits (66), Expect = 1.0
Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
Frame = +1
Query: 133 ESEIDSPVGTPQ----PPAIPNQVSPPGPIPTQTFTNQHYVQLPGVESRNLAACPCRLSL 300
E E P G P+ A+P ++S P PI + Q YV +RN A CR
Sbjct: 159 EDEFIDPAGGPRVGSSSSALPYELSSPPPILMEPQVFQQYVVDSFKSARNAIATLCR--- 215
Query: 301 IFHRIQSMQGLHRHPCP 351
F + + HR P P
Sbjct: 216 -FGCVAPTRRRHRSPAP 231
>At5g14540.1 68418.m01704 proline-rich family protein contains
proline rich extensin domains, INTERPRO:IPR002965
Length = 547
Score = 29.9 bits (64), Expect = 1.8
Identities = 23/77 (29%), Positives = 33/77 (42%), Gaps = 3/77 (3%)
Frame = +1
Query: 10 PLRPLPPI-TLQEVEHAYFAQQ--YPQQRPITEVIGSQNFFFLQESEIDSPVGTPQPPAI 180
P +P PP +L + + QQ YPQQ P + + + +E P PP
Sbjct: 313 PYQPPPPTQSLHQPPYQPPPQQPQYPQQPP--PQLQHPSGYNPEEPPYPQQSYPPNPPRQ 370
Query: 181 PNQVSPPGPIPTQTFTN 231
P PPG P+Q + N
Sbjct: 371 PPSHPPPGSAPSQQYYN 387
>At4g03830.1 68417.m00534 myosin heavy chain-related
Length = 578
Score = 29.5 bits (63), Expect = 2.4
Identities = 26/90 (28%), Positives = 35/90 (38%)
Frame = +2
Query: 353 AARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSPV 532
A + A ARQ + A+ + P+ +RT AT SR S R Q D
Sbjct: 297 AKQPRAEEDGGARQKPSTLASKNDA-PAPDSRTPSKATSSRDPSKRYGDKKRKQSDKDAR 355
Query: 533 SPVTDKEDDCRKDGPSPELENGGDRKGDSQ 622
SP + SP + +KGDSQ
Sbjct: 356 SPARSVRVRTEERDASPSQQKEKGKKGDSQ 385
>At1g13730.1 68414.m01612 nuclear transport factor 2 (NTF2) family
protein / RNA recognition motif (RRM)-containing protein
contains Pfam profiles PF02136: Nuclear transport factor
2 (NTF2) domain, PF00076: RNA recognition motif (a.k.a.
RRM, RBD, or RNP domain)
Length = 428
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/54 (27%), Positives = 28/54 (51%)
Frame = +2
Query: 368 APARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSP 529
+PA+ ++ T P+AA ++ P+ + S AT ++ G + A L D +P
Sbjct: 237 SPAKPKSKPVTKPSAARESKAPAPVSEHSSAATIDQQAEGYTIFVANLLMDATP 290
>At4g20700.1 68417.m03008 hypothetical protein
Length = 529
Score = 29.1 bits (62), Expect = 3.2
Identities = 24/68 (35%), Positives = 29/68 (42%), Gaps = 2/68 (2%)
Frame = +2
Query: 401 APAAACHARRPS--TSARTSHNATRSRRDSGTRLCYARLQEDTSPVSPVTDKEDDCRKDG 574
AP A RPS T+AR S RSR++ TR R+ D P KE +
Sbjct: 60 APWAIRRLDRPSVKTTARRSSRG-RSRQNLATRWKMGRINLDAIPNYSRKYKEKRAVSET 118
Query: 575 PSPELENG 598
P P L G
Sbjct: 119 PQPSLSEG 126
>At3g61150.1 68416.m06843 homeobox-leucine zipper family protein /
homeodomain GLABRA2 like protein 1 (HD-GL2-1) similar to
Anthocyaninless2 (ANL2) (GP:5702094) Arabidopsis
thaliana, EMBL:AF077335
Length = 808
Score = 29.1 bits (62), Expect = 3.2
Identities = 17/49 (34%), Positives = 26/49 (53%)
Frame = -2
Query: 615 SPLRSPPFSNSGLGPSFLQSSSLSVTGETGEVSSCRRA*QRRVPESRRE 469
+P +S PFS+SGL + +S GE E + R++ + ESR E
Sbjct: 41 APSQSLPFSSSGLSLGLQTNGEMSRNGEIMESNVSRKSSRGEDVESRSE 89
>At2g20690.1 68415.m02429 lumazine-binding family protein SP|P50854
Riboflavin synthase alpha chain (EC 2.5.1.9)
{Actinobacillus pleuropneumoniae}; contains Pfam profile
PF00677: Lumazine binding domain
Length = 271
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/43 (34%), Positives = 24/43 (55%)
Frame = +3
Query: 9 SSTSIAADNVTRSRTCLLCTTVSSTKTHHRSYRLSKLFLFTRV 137
S T++ D V++S L T+ ++THHR LS +FT +
Sbjct: 26 SVTNLRFDCVSKSSKLSLKTSCGRSRTHHRRQNLSIRSVFTGI 68
>At2g36010.3 68415.m04422 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 485
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +1
Query: 340 HPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNPLS 474
HP P P T T + PPI R S PP H S + NP S
Sbjct: 21 HP-PSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRFNPSS 64
>At2g36010.2 68415.m04421 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 514
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +1
Query: 340 HPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNPLS 474
HP P P T T + PPI R S PP H S + NP S
Sbjct: 21 HP-PSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRFNPSS 64
>At2g36010.1 68415.m04420 E2F transcription factor-3 (E2F3)
identical to E2F transcription factor-3 E2F3
[Arabidopsis thaliana] gi|10443853|gb|AAG17610
Length = 483
Score = 28.7 bits (61), Expect = 4.2
Identities = 18/45 (40%), Positives = 20/45 (44%)
Frame = +1
Query: 340 HPCPCRPYLRTRTVLCPPIYRPRCRLSRTPPLHLSPYITQCNPLS 474
HP P P T T + PPI R S PP H S + NP S
Sbjct: 21 HP-PSSPVPVTSTPVIPPIRRHLAFASTKPPFHPSDDYHRFNPSS 64
>At2g28440.1 68415.m03455 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965;
contains similarity to vegetative cell wall protein gp1
[Chlamydomonas reinhardtii] gi|12018147|gb|AAG45420; +
Length = 268
Score = 28.7 bits (61), Expect = 4.2
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +2
Query: 392 QSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSPVSPVTDKEDDC-RK 568
+S +PAA R PST + S + S + + L + E+ SP+ P + E+D
Sbjct: 26 ESPSPAAVSPGREPSTDSPLSPS---SSPEEDSPLSPSSSPEEDSPLPPSSSPEEDSPLA 82
Query: 569 DGPSPELEN 595
SPE+++
Sbjct: 83 PSSSPEVDS 91
>At4g16140.1 68417.m02445 proline-rich family protein contains
proline-rich extensin domains, INTERPRO:IPR002965
Length = 164
Score = 28.3 bits (60), Expect = 5.5
Identities = 11/20 (55%), Positives = 12/20 (60%)
Frame = +1
Query: 163 PQPPAIPNQVSPPGPIPTQT 222
P PP P+ SPP P PT T
Sbjct: 45 PSPPPPPSNPSPPPPSPTTT 64
>At3g13300.1 68416.m01674 transducin family protein / WD-40 repeat
family protein contains 2 WD-40 repeats (PF00400);
autoantigen locus HUMAUTANT (GI:533202) [Homo sapiens]
and autoantigen locus HSU17474 (GI:596134) [Homo
sapiens]
Length = 1344
Score = 28.3 bits (60), Expect = 5.5
Identities = 12/39 (30%), Positives = 17/39 (43%)
Frame = +1
Query: 151 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPGVESR 267
P P PP + P GP + QHY PG+ ++
Sbjct: 24 PSSNPYPPPAASYPPPTGPFLHNQYDQQHYAP-PGISAQ 61
>At5g48360.1 68418.m05975 formin homology 2 domain-containing
protein / FH2 domain-containing protein contains formin
homology 2 domain, Pfam:PF02181
Length = 782
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +1
Query: 109 SQNFFFLQESEIDSPVGTPQPPAIPNQVSPPGPIP 213
S+ + ES + P+ PP P + SPP P P
Sbjct: 30 SRRLLYDYESPLPLPLSPISPPFFPLESSPPSPPP 64
>At4g30820.2 68417.m04368 cyclin-dependent kinase-activating kinase
assembly factor-related / CDK-activating kinase assembly
factor-related contains similarity to CDK-activating
kinase assembly factor MAT1 (RING finger protein MAT1)
(Menage a trois) (CDK7/cyclin H assembly factor)
(Swiss-Prot:P51950) [Marthasterias glacialis]
Length = 178
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 386 ARQSTAPAAACHARRPSTSARTSHN 460
A + TA AAC A+ P T A TS N
Sbjct: 83 AEELTAALAACKAKPPQTDADTSSN 107
>At4g30820.1 68417.m04367 cyclin-dependent kinase-activating kinase
assembly factor-related / CDK-activating kinase assembly
factor-related contains similarity to CDK-activating
kinase assembly factor MAT1 (RING finger protein MAT1)
(Menage a trois) (CDK7/cyclin H assembly factor)
(Swiss-Prot:P51950) [Marthasterias glacialis]
Length = 178
Score = 27.9 bits (59), Expect = 7.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +2
Query: 386 ARQSTAPAAACHARRPSTSARTSHN 460
A + TA AAC A+ P T A TS N
Sbjct: 83 AEELTAALAACKAKPPQTDADTSSN 107
>At4g11430.1 68417.m01841 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965; related to hydroxyproline-rich
glycoprotein [Phaseolus vulgaris] gi|169349|gb|AAA33765
Length = 219
Score = 27.9 bits (59), Expect = 7.3
Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
Frame = +2
Query: 341 TRAHAARTYAPARSSARQSTAPAA--ACHARRPSTSARTSHNATRSRRDS 484
T H R+ PA + + P A ACH RRP A T+ + + R S
Sbjct: 18 TAGHHRRSPPPATTGHHHRSPPPAITACHHRRPPLPATTAGHHRQLRPPS 67
>At3g45120.1 68416.m04870 hypothetical protein
Length = 106
Score = 27.9 bits (59), Expect = 7.3
Identities = 15/61 (24%), Positives = 26/61 (42%), Gaps = 1/61 (1%)
Frame = +2
Query: 437 TSART-SHNATRSRRDSGTRLCYARLQEDTSPVSPVTDKEDDCRKDGPSPELENGGDRKG 613
T+ +T +N +R+ D C + + V D++DD D + E G + G
Sbjct: 41 TTVKTLGNNVSRTHGDDAESDCVCDSVSNVDENNEVVDEQDDVEDDKTDEDEEEGDNEDG 100
Query: 614 D 616
D
Sbjct: 101 D 101
>At3g36659.1 68416.m00783 invertase/pectin methylesterase inhibitor
family protein similar to extensin-like protein [Zea
mays] GI:5917666
Length = 264
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/34 (35%), Positives = 18/34 (52%), Gaps = 1/34 (2%)
Frame = +1
Query: 133 ESEIDSPVGTPQP-PAIPNQVSPPGPIPTQTFTN 231
ES DSP TP P P + ++ P P + +T+
Sbjct: 26 ESRSDSPFSTPAPAPEVMKPIASPANSPAEIYTD 59
>At3g21215.1 68416.m02681 RNA-binding protein, putative contains RNA
recognition motif, Pfam:PF00076; contains AT-AC splice
sites at intron 8
Length = 339
Score = 27.9 bits (59), Expect = 7.3
Identities = 10/21 (47%), Positives = 12/21 (57%)
Frame = +1
Query: 151 PVGTPQPPAIPNQVSPPGPIP 213
P G P PPA + +PP P P
Sbjct: 15 PAGAPPPPAAVSSAAPPHPPP 35
>At2g09865.1 68415.m01022 hypothetical protein
Length = 339
Score = 27.9 bits (59), Expect = 7.3
Identities = 14/41 (34%), Positives = 21/41 (51%), Gaps = 4/41 (9%)
Frame = +1
Query: 133 ESEIDSPVGTPQPP----AIPNQVSPPGPIPTQTFTNQHYV 243
E E PVG P+ A+P ++ P PIP + + Q Y+
Sbjct: 259 EDEFIDPVGGPRVGSSSLALPYELPSPTPIPIEPYVFQQYI 299
>At5g49280.1 68418.m06099 hydroxyproline-rich glycoprotein family
protein contains proline-rich extensin domains,
INTERPRO:IPR002965
Length = 162
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 151 PVGTPQPPAIPNQVSPPGPIPTQTFTNQHYVQLPGVES 264
P +P PP+ P PP P P + Y P +S
Sbjct: 51 PPPSPPPPSTPTTACPPPPSPPSSGGGSSYYYPPPSQS 88
>At4g10640.1 68417.m01738 calmodulin-binding family protein contains
IQ calmodulin-binding motif, Pfam:PF00612
Length = 423
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/66 (25%), Positives = 24/66 (36%)
Frame = +2
Query: 332 CTGTRAHAARTYAPARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCYARL 511
C +R+ R+ +P + S P ART R + RLCYA
Sbjct: 320 CRASRSVMVRSASPRIPCSPSSMQPNYMSATESAKAKARTQSTPRRRPMTAKKRLCYAEE 379
Query: 512 QEDTSP 529
+ SP
Sbjct: 380 ESLRSP 385
>At3g20570.1 68416.m02604 plastocyanin-like domain-containing
protein
Length = 203
Score = 27.5 bits (58), Expect = 9.6
Identities = 21/74 (28%), Positives = 29/74 (39%)
Frame = +2
Query: 377 RSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSPVSPVTDKED 556
R+ AR+ T A PS S S A +SR G L + S + D D
Sbjct: 24 RAYAREFTVGGATGWTV-PSGSQVYSQWAEQSRFQIGDSLLFVYQSNQDSVLQVTRDAYD 82
Query: 557 DCRKDGPSPELENG 598
C D P+ + +G
Sbjct: 83 SCNTDSPTAKFADG 96
>At2g28970.1 68415.m03524 leucine-rich repeat protein kinase,
putative similar to light repressible receptor protein
kinase [Arabidopsis thaliana] gi|1321686|emb|CAA66376;
contains leucine rich repeat (LRR) domains,
Pfam:PF00560; contains protein kinase domain,
Pfam:PF00069
Length = 786
Score = 27.5 bits (58), Expect = 9.6
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -2
Query: 612 PLRSPPFSNSGLGPSFLQSSSLSVTGETGEV 520
P+ P+S+ G +F S+ TGE+G V
Sbjct: 33 PIEESPYSDPSTGLTFTSDSTFIQTGESGRV 63
>At2g18470.1 68415.m02151 protein kinase family protein contains
Pfam PF00069: Protein kinase domain
Length = 633
Score = 27.5 bits (58), Expect = 9.6
Identities = 20/83 (24%), Positives = 37/83 (44%)
Frame = +2
Query: 368 APARSSARQSTAPAAACHARRPSTSARTSHNATRSRRDSGTRLCYARLQEDTSPVSPVTD 547
AP +S S +P + ++ S A + + T + DS + + + TSP +P
Sbjct: 8 APPTNST-SSPSPPSNTNSTTSSPPAPSPPSPTPPQGDSSS----SPPPDSTSPPAPQAP 62
Query: 548 KEDDCRKDGPSPELENGGDRKGD 616
+ + PSP + GG +G+
Sbjct: 63 NPPNSSNNSPSPPSQGGGGERGN 85
>At1g01010.1 68414.m00001 no apical meristem (NAM) family protein
contains Pfam PF02365: No apical meristem (NAM) domain;
similar to NAC domain protein NAM GB: AAD17313
GI:4325282 from [Arabidopsis thaliana]
Length = 429
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Frame = +1
Query: 1 PGYP-LRPLPPITLQEVEHAYFAQQYPQQRPITEVIGSQ 114
PG+ + +P + + E H Y AQ+ P+Q+ +VI SQ
Sbjct: 333 PGHTRIDDIPSLNIIEPLHNYKAQEQPKQQSKEKVISSQ 371
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,771,246
Number of Sequences: 28952
Number of extensions: 284650
Number of successful extensions: 1469
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1168
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1442
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1594686376
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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