SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0583
         (695 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom...    63   4e-11
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo...    28   1.5  
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S...    27   2.6  
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||...    27   3.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    26   4.5  
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc...    26   5.9  
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc...    26   5.9  
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot...    25   7.8  
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S...    25   7.8  

>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 336

 Score = 62.9 bits (146), Expect = 4e-11
 Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
 Frame = +3

Query: 264 TIELSEK--FQCRGQEFYDAMTRIEMVTAFTQGHVKLDPEKGGKFALFGGNVTGEFKELV 437
           T ++SE   F     E Y        V A+++   +LD    G F+LF GNV G+F  L 
Sbjct: 205 TADISENYTFDAPANELYATFLDPARVAAWSRAPPQLDVRPQGAFSLFHGNVVGKFLVLE 264

Query: 438 PGKRIVQYWRYKQWPEQHYSEVT 506
             K+IVQ WR   WP  HY+E+T
Sbjct: 265 ENKKIVQTWRLSSWPTGHYAEIT 287



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 19/46 (41%), Positives = 26/46 (56%)
 Frame = +2

Query: 515 EEKDDHTLVRLKQDLVPVAEVEKTRDNWQRYYFDSIKRAFGFGAFL 652
           ++ D +T +R+    VP+ E E  + N Q YY   IK  FGFGA L
Sbjct: 291 DQADSYTTLRMIMKGVPIGEEEVVQGNIQDYYIRPIKTVFGFGAVL 336


>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
           SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1000

 Score = 27.9 bits (59), Expect = 1.5
 Identities = 14/50 (28%), Positives = 27/50 (54%)
 Frame = +2

Query: 56  GGKRSENNSKSIFEV*KKSSQKASFCQRKANLPSNLTMYQQSQVDLIKKS 205
           GG  S +  + IF++ + S +  S    KA++P+N+    Q +   ++KS
Sbjct: 41  GGNESVSVEQEIFDLSQLSERPVSETVSKASIPTNINGLSQVKPSALEKS 90


>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
           Raf2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 636

 Score = 27.1 bits (57), Expect = 2.6
 Identities = 11/35 (31%), Positives = 21/35 (60%)
 Frame = +1

Query: 397 YLVVMLLENLKNSSQERESFNIGDISNGLNNTTQK 501
           +L++ + +N+ N+ QER+   +   +   NNTT K
Sbjct: 196 HLILQINKNIYNARQERKKSKLSSNNPSDNNTTMK 230


>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 197

 Score = 26.6 bits (56), Expect = 3.4
 Identities = 10/31 (32%), Positives = 18/31 (58%)
 Frame = -2

Query: 652 QERSKSESTLNTVKVVSLPVVTGLLNLSDRH 560
           +E   ++ST+  VK+   P++ G +N  D H
Sbjct: 10  REELSAKSTVQNVKISEAPILDGKVNNEDSH 40


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 26.2 bits (55), Expect = 4.5
 Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
 Frame = +1

Query: 196 KKINMNP--IISPQTNKVGCKLIQRQLNYQRNFNVEDKNFM 312
           ++I M P  I+SPQ+NK    ++Q  L   R F++ D NF+
Sbjct: 508 QEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRD-NFL 547


>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
           Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 611

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 13/43 (30%), Positives = 22/43 (51%)
 Frame = +2

Query: 518 EKDDHTLVRLKQDLVPVAEVEKTRDNWQRYYFDSIKRAFGFGA 646
           +K  H + RLKQ   P+++++    +   YY  S  R +G  A
Sbjct: 567 KKYGHKVWRLKQHDTPLSQIQAVTRHHSEYYGMSDPRKYGQAA 609


>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
           Abc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1463

 Score = 25.8 bits (54), Expect = 5.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +1

Query: 418 ENLKNSSQERESFNIGDISNGLNNTTQK 501
           ++L+ SS  R+S ++GDI N ++  TQK
Sbjct: 338 KSLRLSSAARQSRSVGDIVNYMSVDTQK 365


>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
           1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 209

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = +2

Query: 332 DGDCLHSGSCKARSRERWKICLIWW*C 412
           DG+ LH   C+  S  +  I L +W C
Sbjct: 126 DGEVLHRWECEVDSNNKTTIDLKYWYC 152


>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 548

 Score = 25.4 bits (53), Expect = 7.8
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -2

Query: 694 IKIKSNFPTSVHGSQERSKSES 629
           +K+KS  PT+VH + ER K  S
Sbjct: 521 MKLKSQNPTTVHSTTERLKKLS 542


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,328
Number of Sequences: 5004
Number of extensions: 55602
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -