Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0583
(695 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces pom... 63 4e-11
SPBC146.09c |lsd1|swm1, saf110|histone demethylase SWIRM1|Schizo... 28 1.5
SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor Raf2|S... 27 2.6
SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr 1||... 27 3.4
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 26 4.5
SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase Ggt2|Schizosacc... 26 5.9
SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase Abc... 26 5.9
SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting prot... 25 7.8
SPCC188.02 |par1||protein phosphatase regulatory subunit Par1 |S... 25 7.8
>SPBC1711.08 |||chaperone activator Aha1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 336
Score = 62.9 bits (146), Expect = 4e-11
Identities = 32/83 (38%), Positives = 43/83 (51%), Gaps = 2/83 (2%)
Frame = +3
Query: 264 TIELSEK--FQCRGQEFYDAMTRIEMVTAFTQGHVKLDPEKGGKFALFGGNVTGEFKELV 437
T ++SE F E Y V A+++ +LD G F+LF GNV G+F L
Sbjct: 205 TADISENYTFDAPANELYATFLDPARVAAWSRAPPQLDVRPQGAFSLFHGNVVGKFLVLE 264
Query: 438 PGKRIVQYWRYKQWPEQHYSEVT 506
K+IVQ WR WP HY+E+T
Sbjct: 265 ENKKIVQTWRLSSWPTGHYAEIT 287
Score = 40.7 bits (91), Expect = 2e-04
Identities = 19/46 (41%), Positives = 26/46 (56%)
Frame = +2
Query: 515 EEKDDHTLVRLKQDLVPVAEVEKTRDNWQRYYFDSIKRAFGFGAFL 652
++ D +T +R+ VP+ E E + N Q YY IK FGFGA L
Sbjct: 291 DQADSYTTLRMIMKGVPIGEEEVVQGNIQDYYIRPIKTVFGFGAVL 336
>SPBC146.09c |lsd1|swm1, saf110|histone demethylase
SWIRM1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1000
Score = 27.9 bits (59), Expect = 1.5
Identities = 14/50 (28%), Positives = 27/50 (54%)
Frame = +2
Query: 56 GGKRSENNSKSIFEV*KKSSQKASFCQRKANLPSNLTMYQQSQVDLIKKS 205
GG S + + IF++ + S + S KA++P+N+ Q + ++KS
Sbjct: 41 GGNESVSVEQEIFDLSQLSERPVSETVSKASIPTNINGLSQVKPSALEKS 90
>SPCC970.07c |raf2|dos2, cmc2, clr7|Rik1-associated factor
Raf2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 636
Score = 27.1 bits (57), Expect = 2.6
Identities = 11/35 (31%), Positives = 21/35 (60%)
Frame = +1
Query: 397 YLVVMLLENLKNSSQERESFNIGDISNGLNNTTQK 501
+L++ + +N+ N+ QER+ + + NNTT K
Sbjct: 196 HLILQINKNIYNARQERKKSKLSSNNPSDNNTTMK 230
>SPAC26F1.02 |||pinin homologue|Schizosaccharomyces pombe|chr
1|||Manual
Length = 197
Score = 26.6 bits (56), Expect = 3.4
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -2
Query: 652 QERSKSESTLNTVKVVSLPVVTGLLNLSDRH 560
+E ++ST+ VK+ P++ G +N D H
Sbjct: 10 REELSAKSTVQNVKISEAPILDGKVNNEDSH 40
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/41 (39%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Frame = +1
Query: 196 KKINMNP--IISPQTNKVGCKLIQRQLNYQRNFNVEDKNFM 312
++I M P I+SPQ+NK ++Q L R F++ D NF+
Sbjct: 508 QEITMVPKQIVSPQSNKPVMGIVQDTLAGVRKFSLRD-NFL 547
>SPAC56E4.06c |ggt2||gamma-glutamyltranspeptidase
Ggt2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 611
Score = 25.8 bits (54), Expect = 5.9
Identities = 13/43 (30%), Positives = 22/43 (51%)
Frame = +2
Query: 518 EKDDHTLVRLKQDLVPVAEVEKTRDNWQRYYFDSIKRAFGFGA 646
+K H + RLKQ P+++++ + YY S R +G A
Sbjct: 567 KKYGHKVWRLKQHDTPLSQIQAVTRHHSEYYGMSDPRKYGQAA 609
>SPAC3F10.11c |abc2||glutathione S-conjugate-exporting ATPase
Abc2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1463
Score = 25.8 bits (54), Expect = 5.9
Identities = 12/28 (42%), Positives = 20/28 (71%)
Frame = +1
Query: 418 ENLKNSSQERESFNIGDISNGLNNTTQK 501
++L+ SS R+S ++GDI N ++ TQK
Sbjct: 338 KSLRLSSAARQSRSVGDIVNYMSVDTQK 365
>SPBC11B10.06 |sws1||SWIM domain containing-Srs2 interacting protein
1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 209
Score = 25.4 bits (53), Expect = 7.8
Identities = 10/27 (37%), Positives = 14/27 (51%)
Frame = +2
Query: 332 DGDCLHSGSCKARSRERWKICLIWW*C 412
DG+ LH C+ S + I L +W C
Sbjct: 126 DGEVLHRWECEVDSNNKTTIDLKYWYC 152
>SPCC188.02 |par1||protein phosphatase regulatory subunit Par1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 548
Score = 25.4 bits (53), Expect = 7.8
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = -2
Query: 694 IKIKSNFPTSVHGSQERSKSES 629
+K+KS PT+VH + ER K S
Sbjct: 521 MKLKSQNPTTVHSTTERLKKLS 542
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,793,328
Number of Sequences: 5004
Number of extensions: 55602
Number of successful extensions: 205
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 201
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 205
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 321151040
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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