Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0583
(695 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23682| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 2e-04
SB_3436| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.51
SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17) 31 1.2
SB_40264| Best HMM Match : DUF667 (HMM E-Value=0) 30 1.6
SB_41382| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.7
SB_39551| Best HMM Match : UPF0154 (HMM E-Value=3.9) 29 2.7
SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5) 29 3.6
SB_6098| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=1e-39) 29 4.8
SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 4.8
SB_14803| Best HMM Match : Aldedh (HMM E-Value=4.9e-08) 28 6.3
SB_32640| Best HMM Match : Aldedh (HMM E-Value=4.9e-08) 28 6.3
>SB_23682| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 528
Score = 43.6 bits (98), Expect = 2e-04
Identities = 18/43 (41%), Positives = 28/43 (65%)
Frame = +2
Query: 506 INIEEKDDHTLVRLKQDLVPVAEVEKTRDNWQRYYFDSIKRAF 634
I + +KDD T ++L Q VP A E T+ W++YY+ +IK+ F
Sbjct: 259 ITLSQKDDRTELKLVQAGVPEASYENTKQGWKQYYWAAIKQTF 301
Score = 32.3 bits (70), Expect = 0.39
Identities = 11/27 (40%), Positives = 17/27 (62%)
Frame = +3
Query: 444 KRIVQYWRYKQWPEQHYSEVTLILKRR 524
++IV WR K WP H+S T+ L ++
Sbjct: 238 EKIVMEWRQKSWPAGHHSTATITLSQK 264
>SB_3436| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 127
Score = 31.9 bits (69), Expect = 0.51
Identities = 14/31 (45%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Frame = +1
Query: 31 VKAFMHHVGREEIRKQLQEYIRSLK-EEFSK 120
+KAF+H G E ++++EY+++LK +EFSK
Sbjct: 81 MKAFLHDYGAELSEEKMKEYMKALKTKEFSK 111
>SB_23459| Best HMM Match : Glyco_hydro_18 (HMM E-Value=0.17)
Length = 797
Score = 30.7 bits (66), Expect = 1.2
Identities = 12/31 (38%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Frame = +1
Query: 31 VKAFMHHVGREEIRKQLQEYIRSLK-EEFSK 120
+KA +HH G E ++++EY+++L+ ++FSK
Sbjct: 764 MKAILHHYGAELSERKMKEYMKALRTKKFSK 794
>SB_40264| Best HMM Match : DUF667 (HMM E-Value=0)
Length = 2074
Score = 30.3 bits (65), Expect = 1.6
Identities = 13/31 (41%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Frame = +1
Query: 31 VKAFMHHVGREEIRKQLQEYIRSLK-EEFSK 120
+KAF+H G E ++++EY+++LK ++FSK
Sbjct: 1776 MKAFLHDYGAELSEEKMKEYMKALKTKKFSK 1806
>SB_41382| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 320
Score = 29.5 bits (63), Expect = 2.7
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = -3
Query: 489 VVQAIAYISNIERFSFLGRVL*ILQ*HYHQIRQIFHLSRDLALHD 355
V+Q +I+N +R+ L + L+ HY+++RQ+ H++ + D
Sbjct: 232 VLQISTFITNYDRYYKLRQHYYKLRQHYYKLRQVLHIATGITNWD 276
>SB_39551| Best HMM Match : UPF0154 (HMM E-Value=3.9)
Length = 85
Score = 29.5 bits (63), Expect = 2.7
Identities = 12/31 (38%), Positives = 24/31 (77%), Gaps = 1/31 (3%)
Frame = +1
Query: 31 VKAFMHHVGREEIRKQLQEYIRSLK-EEFSK 120
+KA +H+ G E ++++EY+++LK ++FSK
Sbjct: 42 IKAILHNYGAELSEERMKEYMKALKTKKFSK 72
>SB_54480| Best HMM Match : Folate_rec (HMM E-Value=1.5)
Length = 635
Score = 29.1 bits (62), Expect = 3.6
Identities = 17/35 (48%), Positives = 18/35 (51%)
Frame = +3
Query: 48 SCRAGRDPKTTPRVYSKSKRRVLKRPHSAKERRIF 152
SC GR P T R S S RRV R S RR+F
Sbjct: 435 SCATGRLPGCT-RKPSGSSRRVFSRKPSGSSRRVF 468
>SB_6098| Best HMM Match : Gal-3-0_sulfotr (HMM E-Value=1e-39)
Length = 463
Score = 28.7 bits (61), Expect = 4.8
Identities = 18/77 (23%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Frame = +1
Query: 61 EEIRKQLQEYIRSLKEEFSKGLILPKKGESSVKPDNVSTITSGFNKKINMNPIISPQTNK 240
E+I++ ++ + LKE K L ++ SS++ + S + + +NP++S + N+
Sbjct: 321 EKIKRHGDDFYKDLKEFRQKNADLQRECVSSMEVRERAVGISQLVRGLTINPLVS-RFNR 379
Query: 241 VGC-KLIQRQLNYQRNF 288
C K++ ++ Y + F
Sbjct: 380 YFCYKIVTNEVEYIKYF 396
>SB_35738| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1186
Score = 28.7 bits (61), Expect = 4.8
Identities = 12/31 (38%), Positives = 23/31 (74%), Gaps = 1/31 (3%)
Frame = +1
Query: 31 VKAFMHHVGREEIRKQLQEYIRSLK-EEFSK 120
+KA +H G E ++++EY+++LK ++FSK
Sbjct: 291 IKAILHDYGAELSEEKMKEYMKALKTKKFSK 321
>SB_14803| Best HMM Match : Aldedh (HMM E-Value=4.9e-08)
Length = 195
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/46 (21%), Positives = 26/46 (56%)
Frame = +1
Query: 178 ITSGFNKKINMNPIISPQTNKVGCKLIQRQLNYQRNFNVEDKNFMM 315
+++G ++ P+ISPQ K C L+Q + + +++ ++ ++
Sbjct: 63 VSAGDQPGADLGPMISPQAKKRACDLVQSGVEQGASLDLDGRDIVV 108
>SB_32640| Best HMM Match : Aldedh (HMM E-Value=4.9e-08)
Length = 195
Score = 28.3 bits (60), Expect = 6.3
Identities = 10/46 (21%), Positives = 26/46 (56%)
Frame = +1
Query: 178 ITSGFNKKINMNPIISPQTNKVGCKLIQRQLNYQRNFNVEDKNFMM 315
+++G ++ P+ISPQ K C L+Q + + +++ ++ ++
Sbjct: 63 VSAGDQPGADLGPMISPQAKKRACDLVQSGVEQGASLDLDGRDIVV 108
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,375,628
Number of Sequences: 59808
Number of extensions: 405592
Number of successful extensions: 1120
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1058
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1120
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1817559367
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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