Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0581
         (738 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4 prot...    25   0.84 
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    24   1.5  
U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.           23   1.9  
EF592539-1|ABQ95985.1|  630|Tribolium castaneum beta-N-acetylglu...    22   5.9  

>EF125543-1|ABL73927.1|  475|Tribolium castaneum chitinase 4
           protein.
          Length = 475

 Score = 24.6 bits (51), Expect = 0.84
 Identities = 10/26 (38%), Positives = 13/26 (50%)
 Frame = +3

Query: 261 PIPSPHAPVKLSPGSVKSPSHDDADL 338
           P+P P   V   P S K+P+    DL
Sbjct: 392 PVPQPVEEVTQKPSSTKAPAPPSRDL 417


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 10/35 (28%), Positives = 18/35 (51%)
 Frame = +2

Query: 395 WDQLRRHQGIREGLQTATTWSGTYADPSRPSPVGH 499
           W Q RR +  R+ +  A  ++  Y DP+  + + H
Sbjct: 118 WFQNRRMKDKRQRMAIAWPYAAVYTDPAFAASIFH 152


>U09586-1|AAC47270.1|  425|Tribolium castaneum ORF 1 protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.9
 Identities = 15/46 (32%), Positives = 18/46 (39%)
 Frame = +3

Query: 255 TGPIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVV 392
           T P P P  PV   P  + SP       L   P   T S +S  V+
Sbjct: 78  TSPEPDPEIPVAPEPAPLASP-------LVQEPGSSTTSATSGAVM 116


>EF592539-1|ABQ95985.1|  630|Tribolium castaneum
           beta-N-acetylglucosaminidase FDL protein.
          Length = 630

 Score = 21.8 bits (44), Expect = 5.9
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -3

Query: 478 TWVCVSPRPSRRSLK 434
           TW C++ R  RR +K
Sbjct: 57  TWQCINQRCERRHIK 71


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,083
Number of Sequences: 336
Number of extensions: 3428
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 19779950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)