Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0581
         (738 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    31   0.17 
SPCC736.14 |dis1||microtubule-associated protein Dis1 |Schizosac...    28   1.6  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    27   3.7  
SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1 re...    26   4.9  
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch...    26   4.9  
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    26   6.4  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    26   6.4  
SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|ch...    26   6.4  
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ...    26   6.4  
SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces po...    26   6.4  
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha...    26   6.4  
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy...    25   8.5  

>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +3

Query: 261  PIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKAFK 440
            P+P+P AP  L+P SV +        +  + + P +  +S +     NLED     KA  
Sbjct: 1180 PVPAPAAPQTLNPPSVSTVQQSKP--IESNTHTPEVKATSESPSASSNLEDRAARIKAEA 1237

Query: 441  LRRL 452
             RR+
Sbjct: 1238 QRRM 1241


>SPCC736.14 |dis1||microtubule-associated protein Dis1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 882

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 18/47 (38%), Positives = 23/47 (48%)
 Frame = -3

Query: 463 SPRPSRRSLKAFANSLMSSKLIPSTTLLEDWLIVGWFGESANRSASS 323
           S  PS+ SL   + S  SS   PSTT L    +V  F  S  ++ SS
Sbjct: 572 SSNPSQASLTEESLSTRSSPTKPSTTSLRSQSLVNRFASSTLKAPSS 618


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 26.6 bits (56), Expect = 3.7
 Identities = 17/56 (30%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 201 TITTSHNASGAN*QRRQRTGPIPSPHAPVKLSPGSVKSPSHDDA-DLLADSPNQPT 365
           T T S +    +     +   I SPHA    SP + K  SH+   D+ A  P +P+
Sbjct: 97  TFTLSVSPDSQSSSATHQNDYISSPHADFSFSPPASKIQSHEPLNDMAAVHPLRPS 152


>SPBC1604.01 |mug158|SPBC1677.01c|sulfatase modifying factor 1
           related|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 773

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 13/38 (34%), Positives = 23/38 (60%), Gaps = 4/38 (10%)
 Frame = -3

Query: 565 TFWCYIQFLKSADRTLTICG--PSVTDRAW--PTWVCV 464
           T + Y+Q  ++A++T++ICG  P   ++    P WV V
Sbjct: 484 TLYIYVQSFQNANQTVSICGSLPEPAEKLTKAPLWVNV 521


>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
           homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1092

 Score = 26.2 bits (55), Expect = 4.9
 Identities = 14/50 (28%), Positives = 25/50 (50%)
 Frame = +3

Query: 225 SGAN*QRRQRTGPIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQ 374
           +GA+    Q TG  PSP   +     S  +P++ + + + D  + PT+ Q
Sbjct: 282 TGASTIAPQPTGTSPSPPVEMNFPDTSDITPAYSEPEPIQDFWSDPTLDQ 331


>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 18/80 (22%), Positives = 43/80 (53%)
 Frame = +3

Query: 153 AAMNSINRLAASNGEITITTSHNASGAN*QRRQRTGPIPSPHAPVKLSPGSVKSPSHDDA 332
           ++ +S +R A+S+   +  +SH +S ++   +  + P+ S       +  S +S SH  +
Sbjct: 385 SSSSSSSRPASSSSHSSSLSSHKSSSSS---KSSSAPVSSAFYH---NSTSSRSSSHSSS 438

Query: 333 DLLADSPNQPTISQSSSNVV 392
             L+   ++P ++ SSS+++
Sbjct: 439 HSLSSLSSKPILTASSSSLL 458


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 13/39 (33%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
 Frame = +2

Query: 353 KPANDQPVFQQRSRWDQLRR-HQGIREGLQTATTWSGTY 466
           +P   QP  Q   +  Q R+ H GI++ + T  + +GTY
Sbjct: 185 QPQQPQPPQQPLQQQQQQRQLHSGIQQPVSTIVSQNGTY 223


>SPBC1709.14 |||peptide N-glycanase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 333

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 21/81 (25%), Positives = 37/81 (45%), Gaps = 2/81 (2%)
 Frame = +3

Query: 480 GQALSVTEGPHIVKVRSADLRNWI*HQKVRRKSNRCFERWMKEAEEKVRIPVKNHLTDF- 656
           G+ +S   G  I  VR    R +I H +     +RC E  +++A  ++ I  ++ LTD  
Sbjct: 224 GKKMSYCLGFGIDSVRDVSHR-YIRHPENGLPRDRCPESVLQQALHEINIEFRSRLTDSE 282

Query: 657 -IGIGAEQKAQTANIRSHFRP 716
              +  E K +   +  + RP
Sbjct: 283 RKALEEEDKREKDELDGYMRP 303


>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
           Its3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 742

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 15/51 (29%), Positives = 24/51 (47%)
 Frame = +3

Query: 267 PSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIK 419
           P+ H+P   S  SV + +     +L DSP    +   SSN      L+++K
Sbjct: 93  PTAHSPSSSSNDSVITATGVPDGILRDSPIVSALEPPSSNSSSSPQLQNLK 143


>SPAP14E8.04 |oma1||metallopeptidase Oma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 337

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 12/43 (27%), Positives = 23/43 (53%), Gaps = 1/43 (2%)
 Frame = +3

Query: 474 QVGQALSVTEGPHIVKVRSADLRNWI*HQKVRRKSNRCF-ERW 599
           Q+G+AL+        K R   +  W+   +V+R+++ C+ E W
Sbjct: 284 QMGKALAFASTHPSSKKRIRKIEEWLPEAQVKRETSDCYHETW 326


>SPCC1235.05c |fft2||fun thirty related protein
           Fft2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1284

 Score = 25.8 bits (54), Expect = 6.4
 Identities = 9/16 (56%), Positives = 12/16 (75%)
 Frame = +3

Query: 504 GPHIVKVRSADLRNWI 551
           GPH+V V S+ L NW+
Sbjct: 599 GPHLVVVPSSTLENWL 614


>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1201

 Score = 25.4 bits (53), Expect = 8.5
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = +3

Query: 570 RKSNRCFERWMKEAEEKVRI 629
           RK + C  +W+ EAE ++R+
Sbjct: 442 RKGSDCLSKWVGEAERQLRL 461


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,891,598
Number of Sequences: 5004
Number of extensions: 58100
Number of successful extensions: 217
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 217
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 349251756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)