Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0581
(738 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0026 + 265755-265968,267319-267468,267694-267738,267786-26... 33 0.18
03_03_0246 + 15789635-15794227,15794314-15794555,15794630-157947... 31 0.72
11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395 30 1.7
06_01_0944 + 7264833-7265120,7265511-7265600,7265702-7265798,726... 29 2.9
10_08_0672 + 19762340-19762432,19762543-19762735,19763225-197632... 29 3.9
08_02_1162 - 24811327-24812162,24815969-24816028,24816526-248167... 29 3.9
06_03_1049 + 27173732-27173902,27175235-27175291,27176311-271763... 29 3.9
03_03_0277 + 16116017-16117424,16117461-16117660,16117739-161178... 29 3.9
02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608 29 3.9
08_02_0232 - 14584952-14586451 28 6.7
03_06_0520 - 34487664-34488274,34488785-34488974,34489585-344910... 28 6.7
02_03_0396 - 18568908-18569032,18569157-18569262 28 8.9
01_06_1827 + 40169001-40169263,40169358-40169472,40170090-401702... 28 8.9
>06_01_0026 +
265755-265968,267319-267468,267694-267738,267786-268460,
268779-268843,268854-269073,269163-269438,269547-269663,
269776-269853,269930-270184,270235-270323,270403-270816
Length = 865
Score = 33.5 bits (73), Expect = 0.18
Identities = 22/64 (34%), Positives = 32/64 (50%)
Frame = -3
Query: 472 VCVSPRPSRRSLKAFANSLMSSKLIPSTTLLEDWLIVGWFGESANRSASSCDGDFTEPGD 293
+ V + S+R L A + SS+L PS T ED+ V + G S+ + SS PG
Sbjct: 490 ISVQQQESKRPLPAES----SSQLQPSNTKKEDFGTVSFSGSSSVEAPSSSSASIINPGQ 545
Query: 292 SLTG 281
+ TG
Sbjct: 546 TATG 549
>03_03_0246 + 15789635-15794227,15794314-15794555,15794630-15794771,
15796089-15796272,15796349-15796696,15796753-15797450,
15798208-15798900
Length = 2299
Score = 31.5 bits (68), Expect = 0.72
Identities = 18/57 (31%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +3
Query: 240 QRRQRTGPIPSPHAPVKLS--PGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGIN 404
Q R PI + + +S P S SHD+ D+ DSP PT + V+ I+
Sbjct: 871 QNGDRENPILGSQSSLSVSSPPSSPPHVSHDEMDVSGDSPALPTSADGDRTVMSDID 927
>11_06_0221 - 21387365-21387652,21387892-21389952,21390360-21390395
Length = 794
Score = 30.3 bits (65), Expect = 1.7
Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Frame = +2
Query: 359 ANDQPVFQQRSRWDQLRRHQGIRE--GLQTATTWSGTYADPSRPSPV 493
+N+ QQR+R D+LR +G+ E G ++ + T D +PSPV
Sbjct: 428 SNESFAMQQRARPDELRTDRGLLERCGKLLSSIQAFTAGDDQQPSPV 474
>06_01_0944 +
7264833-7265120,7265511-7265600,7265702-7265798,
7265927-7265988,7266508-7266596,7266702-7266822,
7266915-7267058,7267492-7267820,7268154-7268394,
7269042-7269245,7271150-7271619,7272703-7272746,
7273121-7273211,7273494-7273596,7273682-7273783,
7274214-7274300,7274421-7274531
Length = 890
Score = 29.5 bits (63), Expect = 2.9
Identities = 22/72 (30%), Positives = 32/72 (44%), Gaps = 3/72 (4%)
Frame = +3
Query: 174 RLAASNGEITITTSHNASGAN*QRRQRTGPIPSPHAPVKLSPGSVKSPS---HDDADLLA 344
RLAA G + S +A+G ++ + P P+P AP SP P H
Sbjct: 605 RLAAKEGAYFLQESKHAAGRLAEKLPASAPAPAP-APGSTSPSPDVLPEILRHAVPIKAT 663
Query: 345 DSPNQPTISQSS 380
P +P++S SS
Sbjct: 664 PPPGEPSLSASS 675
>10_08_0672 +
19762340-19762432,19762543-19762735,19763225-19763269,
19763381-19763432,19763601-19763704,19763887-19763987,
19764225-19764283,19764536-19764592,19764944-19764989,
19765187-19765266,19766841-19767096,19767210-19767405,
19768368-19768448,19768536-19768587,19768759-19768862,
19769586-19769686,19769924-19769982,19770491-19770536,
19770789-19770868,19770953-19771013
Length = 621
Score = 29.1 bits (62), Expect = 3.9
Identities = 25/91 (27%), Positives = 37/91 (40%)
Frame = +2
Query: 311 VAIARRRRSVGRLTKPANDQPVFQQRSRWDQLRRHQGIREGLQTATTWSGTYADPSRPSP 490
VA+ + R SV D V S + + +RE +T +G +DP P+P
Sbjct: 242 VAVGKERYSVAFFLHTNPDLVVQCLESCCSEACPPRWVREERETRGWAAGRASDPGAPAP 301
Query: 491 VGHRRTAYSQSAICRFEKLDITPKSAQKIKP 583
V R A+S++ R K P KP
Sbjct: 302 V-DRELAFSEADSSRSNKQQPLPGGRGSWKP 331
>08_02_1162 -
24811327-24812162,24815969-24816028,24816526-24816725,
24817436-24817657,24817989-24818312,24818852-24818988
Length = 592
Score = 29.1 bits (62), Expect = 3.9
Identities = 24/76 (31%), Positives = 31/76 (40%), Gaps = 3/76 (3%)
Frame = +3
Query: 261 PIPSPHAPVKLSPG---SVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAK 431
P PSP AP + SV P H DLL + T ++ DGI + K+ A
Sbjct: 360 PAPSPAAPRHVDLADLLSVAGPFHTFLDLLEKTDVLRTFQSQANGSKDGITVFVPKDAAF 419
Query: 432 AFKLRRLGLGLTQTQV 479
A R LT Q+
Sbjct: 420 ASLARSATANLTSDQL 435
>06_03_1049 +
27173732-27173902,27175235-27175291,27176311-27176385,
27176481-27176621,27177144-27177542
Length = 280
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 66 EKRIFCLACCAPYC 25
EK IFCL CCA C
Sbjct: 30 EKNIFCLGCCASIC 43
>03_03_0277 +
16116017-16117424,16117461-16117660,16117739-16117816,
16118381-16118533,16118969-16119280,16119390-16119563,
16120411-16120498,16120598-16120611
Length = 808
Score = 29.1 bits (62), Expect = 3.9
Identities = 32/124 (25%), Positives = 50/124 (40%), Gaps = 1/124 (0%)
Frame = +3
Query: 270 SPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKAFKLRR 449
SP+ KLSP VK P + L + P ++ ++ + N ED A K
Sbjct: 216 SPNVQSKLSPSIVKVPLKTSREQLENMPPSSQLAVTNQDYKAPRN-ED-NPLCTARKTNN 273
Query: 450 LGLGLTQTQVGQALSVTE-GPHIVKVRSADLRNWI*HQKVRRKSNRCFERWMKEAEEKVR 626
LG + + E G H V RN + RKSN+ E +K + K +
Sbjct: 274 AHLGSSVPSESTCIGKVEAGAHAVSRHHPGQRNTA--TNMTRKSNQATEDQVKGSPRK-Q 330
Query: 627 IPVK 638
+P++
Sbjct: 331 LPIQ 334
>02_01_0542 + 3971675-3971845,3973791-3973865,3974129-3974608
Length = 241
Score = 29.1 bits (62), Expect = 3.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 66 EKRIFCLACCAPYC 25
EK IFCLACC C
Sbjct: 30 EKNIFCLACCTSIC 43
>08_02_0232 - 14584952-14586451
Length = 499
Score = 28.3 bits (60), Expect = 6.7
Identities = 19/51 (37%), Positives = 26/51 (50%)
Frame = +2
Query: 398 DQLRRHQGIREGLQTATTWSGTYADPSRPSPVGHRRTAYSQSAICRFEKLD 550
D LRR IRE L +W Y + S + TAY +S+ICR ++ D
Sbjct: 349 DMLRRCPAIRE-LWIRFSWL-EYLNESADDHLDADLTAYLKSSICRLQESD 397
>03_06_0520 -
34487664-34488274,34488785-34488974,34489585-34491045,
34491149-34491163
Length = 758
Score = 28.3 bits (60), Expect = 6.7
Identities = 17/42 (40%), Positives = 22/42 (52%), Gaps = 2/42 (4%)
Frame = -3
Query: 514 ICGPSVTDRAWPTW--VCVSPRPSRRSLKAFANSLMSSKLIP 395
+ GP V D+ + V PRP RR L ANS++S L P
Sbjct: 628 LVGPHVFDKLEGKYSKVATWPRPQRRLLFDLANSVLSEILAP 669
>02_03_0396 - 18568908-18569032,18569157-18569262
Length = 76
Score = 27.9 bits (59), Expect = 8.9
Identities = 12/21 (57%), Positives = 16/21 (76%)
Frame = -1
Query: 108 VRSSPSLCNASQALEKRIFCL 46
V +SP L NASQ LE+++ CL
Sbjct: 27 VAASPKLSNASQNLEQKLDCL 47
>01_06_1827 +
40169001-40169263,40169358-40169472,40170090-40170201,
40170556-40170623,40170798-40170852,40170948-40171027,
40171811-40171924,40172178-40172296,40173064-40173181,
40173264-40173394,40173535-40173688,40173922-40174017
Length = 474
Score = 27.9 bits (59), Expect = 8.9
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 261 PIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGIN 404
P P P P +L P V +PS A PT+S S+S ++ ++
Sbjct: 38 PAPPPPPPPRLEPVVVVAPSTTTATATLPPIITPTLSPSTSTCLECVH 85
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,906,207
Number of Sequences: 37544
Number of extensions: 425004
Number of successful extensions: 1652
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1652
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1945321620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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