Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0581
(738 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_28281| Best HMM Match : Pou (HMM E-Value=0) 51 9e-07
SB_47470| Best HMM Match : Pou (HMM E-Value=1.3e-22) 45 7e-05
SB_53272| Best HMM Match : No HMM Matches (HMM E-Value=.) 39 0.005
SB_12335| Best HMM Match : Pou (HMM E-Value=0) 38 0.011
SB_31379| Best HMM Match : Pou (HMM E-Value=0) 37 0.020
SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.42
SB_2192| Best HMM Match : rve (HMM E-Value=4e-23) 32 0.42
SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0) 30 1.7
SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 2.3
SB_12436| Best HMM Match : HEAT (HMM E-Value=1.7e-05) 29 3.0
SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.9
SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_30638| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.2
SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_21241| Best HMM Match : ErmC (HMM E-Value=1.1) 28 6.9
SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 6.9
SB_57327| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.1
SB_34135| Best HMM Match : rve (HMM E-Value=3e-29) 28 9.1
SB_58522| Best HMM Match : Spb1_C (HMM E-Value=4) 28 9.1
SB_36898| Best HMM Match : Lyase_8 (HMM E-Value=7.2) 28 9.1
>SB_28281| Best HMM Match : Pou (HMM E-Value=0)
Length = 250
Score = 51.2 bits (117), Expect = 9e-07
Identities = 29/75 (38%), Positives = 37/75 (49%)
Frame = +3
Query: 390 VDGINLEDIKEFAKAFKLRRLGLGLTQTQVGQALSVTEGPHIVKVRSADLRNWI*HQKVR 569
VD L +++EFA FKLRR+ LG TQT VG AL+ G + N K
Sbjct: 88 VDPSKLRELEEFATQFKLRRIKLGFTQTNVGAALAAVHGTDFSQTTICRFENLQLSFKNA 147
Query: 570 RKSNRCFERWMKEAE 614
K RW++EAE
Sbjct: 148 CKLKPILARWLEEAE 162
Score = 41.9 bits (94), Expect = 5e-04
Identities = 22/46 (47%), Positives = 31/46 (67%), Gaps = 1/46 (2%)
Frame = +2
Query: 506 TAYSQSAICRFEKLDITPKSAQKIKPVL-RTLDEGSRGKGTHSGQK 640
T +SQ+ ICRFE L ++ K+A K+KP+L R L+E R G G+K
Sbjct: 127 TDFSQTTICRFENLQLSFKNACKLKPILARWLEEAERSGGA-CGEK 171
>SB_47470| Best HMM Match : Pou (HMM E-Value=1.3e-22)
Length = 441
Score = 44.8 bits (101), Expect = 7e-05
Identities = 32/111 (28%), Positives = 52/111 (46%), Gaps = 4/111 (3%)
Frame = +3
Query: 294 SPGSVKSPSH-DDADLLADSPNQPTISQSSSN---VVDGINLEDIKEFAKAFKLRRLGLG 461
SP SPS + + +P PT S+S S + D + +++K F ++F+ RR+ LG
Sbjct: 112 SPSPNMSPSAISEGSGVPLTPTTPTSSKSQSRFGILSDQVLNQEMKSFIESFRTRRIALG 171
Query: 462 LTQTQVGQALSVTEGPHIVKVRSADLRNWI*HQKVRRKSNRCFERWMKEAE 614
TQ VG LS T GP + + + K K + W+++ E
Sbjct: 172 YTQEDVGFELSRTNGPSYSQSFISRFESKNLGLKAAEKMKPVMQSWIEQKE 222
>SB_53272| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 374
Score = 38.7 bits (86), Expect = 0.005
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +3
Query: 408 EDIKEFAKAFKLRRLGLGLTQTQVGQALSVTEGPHIVKVRSADLRNWI*HQKVRRKSNRC 587
+D+++FAK FK RR+ LG TQ VG AL G + K K
Sbjct: 202 DDLEQFAKQFKQRRIKLGFTQADVGLALGTLYGNVFSQTTICRFEALQLSFKNMCKLKPL 261
Query: 588 FERWMKEAE 614
++W++EA+
Sbjct: 262 LQKWLEEAD 270
>SB_12335| Best HMM Match : Pou (HMM E-Value=0)
Length = 401
Score = 37.5 bits (83), Expect = 0.011
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = +2
Query: 515 SQSAICRFEKLDITPKSAQKIKPVL-RTLDEGSRGKGTHSGQKSSD 649
SQ+ ICRFE L ++ K+ K+KP+L + L E H G+K +
Sbjct: 259 SQTTICRFEALQLSLKNMCKLKPLLQKWLQETDASSSGHEGEKQQN 304
>SB_31379| Best HMM Match : Pou (HMM E-Value=0)
Length = 310
Score = 36.7 bits (81), Expect = 0.020
Identities = 17/41 (41%), Positives = 27/41 (65%)
Frame = +3
Query: 393 DGINLEDIKEFAKAFKLRRLGLGLTQTQVGQALSVTEGPHI 515
D +N +++ FA+ FK RR+ LG+TQ VG AL+ + P +
Sbjct: 153 DDMNPRELEWFAERFKQRRIKLGVTQADVGSALAHLKIPGV 193
Score = 31.9 bits (69), Expect = 0.56
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +2
Query: 515 SQSAICRFEKLDITPKSAQKIKPVLRT-LDEGSRGKGT 625
SQS ICRFE L ++ + +KPVL L+E + T
Sbjct: 197 SQSTICRFESLTLSHNNMMALKPVLTAWLEEAEKAYKT 234
>SB_2841| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3297
Score = 32.3 bits (70), Expect = 0.42
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +3
Query: 414 IKEFAKAFKLRRLGLGLTQTQV----GQALSVTEGPHIVKVRSADLRNWI*HQKVRRKSN 581
+KE AK + RR+ +T+TQ+ G+ ++ +V + HQ+V +
Sbjct: 774 LKEKAKGNE-RRISNQMTKTQIEALKGKKWTLNAKNKVVSSEGKPVHLSFAHQRVAHRGR 832
Query: 582 RCFERWMKEAEEKVRIPVKNHLTDFIGIGAEQKAQTANIRSHFRP 716
+ E+W+++ +V V N AEQK T+ ++ +P
Sbjct: 833 QKTEKWIQDNFAEVTQKVINVFVQLCKYHAEQKPITSRVKEVTKP 877
>SB_2192| Best HMM Match : rve (HMM E-Value=4e-23)
Length = 491
Score = 32.3 bits (70), Expect = 0.42
Identities = 25/105 (23%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +3
Query: 414 IKEFAKAFKLRRLGLGLTQTQV----GQALSVTEGPHIVKVRSADLRNWI*HQKVRRKSN 581
+KE AK + RR+ +T+TQ+ G+ ++ +V + HQ+V +
Sbjct: 44 LKEKAKGNE-RRISNQMTKTQIEALKGKKWTLNAKNKVVSSEGKPVHLSFAHQRVAHRGR 102
Query: 582 RCFERWMKEAEEKVRIPVKNHLTDFIGIGAEQKAQTANIRSHFRP 716
+ E+W+++ +V V N AEQK T+ ++ +P
Sbjct: 103 QKTEKWIQDNFAEVTQKVINVFVQLCKYHAEQKPITSRVKEVTKP 147
>SB_24224| Best HMM Match : Lectin_C (HMM E-Value=0)
Length = 2726
Score = 30.3 bits (65), Expect = 1.7
Identities = 15/47 (31%), Positives = 24/47 (51%)
Frame = +3
Query: 249 QRTGPIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNV 389
Q+ P PH+ +L S++S + + L DSPN T Q S ++
Sbjct: 990 QQPSPSSQPHSEPRLPSPSLESSTLQTSQLSNDSPNSYTAPQPSRSI 1036
>SB_2342| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 430
Score = 29.9 bits (64), Expect = 2.3
Identities = 22/75 (29%), Positives = 32/75 (42%)
Frame = +2
Query: 344 RLTKPANDQPVFQQRSRWDQLRRHQGIREGLQTATTWSGTYADPSRPSPVGHRRTAYSQS 523
RL+KP Q + + S R+ QGI L T SP R + Q+
Sbjct: 83 RLSKPKKGQLILVKSSDEQSKRKRQGIFPSLPKGPTSLVHSKKKQGLSPAVSRAVSAMQT 142
Query: 524 AICRFEKLDITPKSA 568
A+ RF+ D +P +A
Sbjct: 143 ALERFKSEDDSPVTA 157
>SB_12436| Best HMM Match : HEAT (HMM E-Value=1.7e-05)
Length = 334
Score = 29.5 bits (63), Expect = 3.0
Identities = 15/36 (41%), Positives = 22/36 (61%)
Frame = +2
Query: 539 EKLDITPKSAQKIKPVLRTLDEGSRGKGTHSGQKSS 646
E LD+T +++ I P++RTLD S +GT SS
Sbjct: 243 ESLDLTDFASRIIHPIVRTLDSCSELRGTAMDTLSS 278
>SB_59580| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 999
Score = 29.1 bits (62), Expect = 3.9
Identities = 16/43 (37%), Positives = 21/43 (48%)
Frame = +3
Query: 276 HAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGIN 404
H P K SP S K S DD D L+ + +++SN G N
Sbjct: 107 HEPPKPSPRSSKQHSLDDGDDLSPRAKPRPLPRATSNTSSGRN 149
>SB_57246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.7 bits (61), Expect = 5.2
Identities = 21/86 (24%), Positives = 39/86 (45%)
Frame = +2
Query: 473 PSRPSPVGHRRTAYSQSAICRFEKLDITPKSAQKIKPVLRTLDEGSRGKGTHSGQKSSDG 652
P + PV + ++ ++ + R E++ +A I P+L+ D+G + S S G
Sbjct: 148 PQKIKPVENIESSMTEENLTRSEEMAALVLTALSISPILKEPDKGHGEEAIFSFSPDS-G 206
Query: 653 LHWNWSRAKSANGEHSFTLQALELLQ 730
WS + S + S + +LE Q
Sbjct: 207 ADMAWSYSPSNSPTISTSPNSLEEFQ 232
>SB_30638| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 318
Score = 28.7 bits (61), Expect = 5.2
Identities = 13/30 (43%), Positives = 19/30 (63%)
Frame = -2
Query: 530 RSHFDYMRSFGDRQGLAYLGLRKSQTKSSQ 441
R+ +Y R FGD++G +LGL T +SQ
Sbjct: 159 RNWDEYKRGFGDKKGEFWLGLDNIHTLTSQ 188
>SB_47112| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 970
Score = 28.3 bits (60), Expect = 6.9
Identities = 20/67 (29%), Positives = 30/67 (44%), Gaps = 4/67 (5%)
Frame = +3
Query: 201 TITTSHNASGAN*Q---RRQRTGP-IPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTI 368
T T+S N + Q Q +GP +P H+ S V SPS + QPT
Sbjct: 131 TATSSINTEATSRQPSTATQVSGPSLPMQHSTEHHSTSGVASPSTKQPSTALTTTKQPTT 190
Query: 369 SQSSSNV 389
Q+++N+
Sbjct: 191 QQTTTNL 197
>SB_21241| Best HMM Match : ErmC (HMM E-Value=1.1)
Length = 562
Score = 28.3 bits (60), Expect = 6.9
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = +2
Query: 350 TKPANDQPVFQQRSRWDQLRRHQGIREGLQTATTWSGTYAD 472
T P+ND ++R + LR+H+ ++GLQ +SG AD
Sbjct: 186 TDPSNDGMSLRERVQ-KTLRKHEKEKQGLQEVHFFSGREAD 225
>SB_1988| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3889
Score = 28.3 bits (60), Expect = 6.9
Identities = 18/54 (33%), Positives = 26/54 (48%), Gaps = 10/54 (18%)
Frame = -2
Query: 539 QICRSHFDYMRSFGDRQGL----------AYLGLRKSQTKSSQFEGLREFLDVF 408
Q+ S+ D++RSFG R+ + Y T+ S F L EF+DVF
Sbjct: 768 QVLSSNGDFIRSFGGRESMHFRYCVYSHGLYYVTASGHTRVSVFNDLGEFVDVF 821
>SB_57327| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 259
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 593 TLDEGSRGKGTHSGQ--KSSDGLHWNWSRAKSANGEHSFTL 709
TL +G RG T + K L W+ +R++ NG H++ L
Sbjct: 68 TLLQGLRGSSTKKKKRTKKKSPLAWDRTRSEEQNGNHTYGL 108
>SB_48634| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1066
Score = 27.9 bits (59), Expect = 9.1
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 261 PIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSN 386
P PS + SP S SPS + L +PN+ + S S+ N
Sbjct: 573 PNPSSDPSLSFSPSSSSSPSVRPSPNLISNPNRNSNSNSNRN 614
>SB_34135| Best HMM Match : rve (HMM E-Value=3e-29)
Length = 324
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 555 HQKVRRKSNRCFERWMKEAEEKVRIPVKNHLTDFIGIGAEQKAQTANIRSHFRP 716
HQ+V + + E+W+++ +V V N AEQK T +++ +P
Sbjct: 102 HQRVAHRGRQKTEKWIQDNFAEVTQKVINVFVQLCKYHAEQKPITRHVKEVTKP 155
>SB_58522| Best HMM Match : Spb1_C (HMM E-Value=4)
Length = 299
Score = 27.9 bits (59), Expect = 9.1
Identities = 19/75 (25%), Positives = 33/75 (44%), Gaps = 3/75 (4%)
Frame = +3
Query: 159 MNSINRLAASNGEI--TITTSHNASGAN*QRRQRTGPIPSPHAPVKLSPGSVKSPS-HDD 329
+N +NR AS + + ++H A G N R+++T P + + K P D
Sbjct: 48 LNDLNRNMASMADTLASFMSAHTAQGVNASRKRKTAPPENTLSSSDDDEEGAKGPKRRDR 107
Query: 330 ADLLADSPNQPTISQ 374
AD L+ + I +
Sbjct: 108 ADRLSHTAEDEEIEE 122
>SB_36898| Best HMM Match : Lyase_8 (HMM E-Value=7.2)
Length = 249
Score = 27.9 bits (59), Expect = 9.1
Identities = 14/41 (34%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
Frame = +2
Query: 593 TLDEGSRGKGTHSGQ--KSSDGLHWNWSRAKSANGEHSFTL 709
TL +G RG T + K L W+ +R++ NG H++ L
Sbjct: 68 TLLQGLRGSSTKKKKRIKKKSPLAWDRTRSEEQNGNHTYGL 108
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,334,270
Number of Sequences: 59808
Number of extensions: 474241
Number of successful extensions: 2716
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 2436
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2696
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1986074805
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -