Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0581
(738 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical pr... 37 0.013
AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family II... 37 0.013
M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein ( C.ele... 33 0.16
M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein ( C.ele... 33 0.16
L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated p... 33 0.16
L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated p... 33 0.16
Z78546-6|CAB54307.1| 642|Caenorhabditis elegans Hypothetical pr... 31 0.64
Z78545-5|CAB01764.2| 642|Caenorhabditis elegans Hypothetical pr... 31 0.64
U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical pr... 31 0.64
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ... 30 2.0
U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeo... 29 2.6
U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeo... 29 2.6
U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeo... 29 2.6
U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein. 29 2.6
AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical ... 29 3.4
AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical ... 29 4.5
Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical p... 28 6.0
AY390544-1|AAQ94956.1| 160|Caenorhabditis elegans SMA-9 class I... 28 6.0
AY390543-1|AAQ94955.1| 251|Caenorhabditis elegans SMA-9 class I... 28 6.0
AY390542-1|AAQ94954.1| 468|Caenorhabditis elegans SMA-9 class I... 28 6.0
U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical pr... 28 7.9
>Z75711-7|CAB00031.2| 380|Caenorhabditis elegans Hypothetical
protein K02B12.1 protein.
Length = 380
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +3
Query: 342 ADSPNQPTISQSSSNVVDGINLEDIKEFAKAFKLRRLGLGLTQTQVGQALSVTEG 506
A P+QP S + + +D++ FAK FK RR+ LG TQ VG AL G
Sbjct: 173 AGGPHQPLSDISDDS--EQTCPDDLEGFAKQFKQRRIKLGYTQADVGVALGTLYG 225
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 512 YSQSAICRFEKLDITPKSAQKIKPVL-RTLDEGSRGKGT 625
+SQ+ ICRFE L ++ K+ K+KP+L + L+E G+
Sbjct: 228 FSQTTICRFEALQLSFKNMCKLKPLLFKWLEEADSTTGS 266
>AF286377-1|AAG10298.1| 380|Caenorhabditis elegans POU family III
homeodomain proteinCEH-6 protein.
Length = 380
Score = 37.1 bits (82), Expect = 0.013
Identities = 22/55 (40%), Positives = 29/55 (52%)
Frame = +3
Query: 342 ADSPNQPTISQSSSNVVDGINLEDIKEFAKAFKLRRLGLGLTQTQVGQALSVTEG 506
A P+QP S + + +D++ FAK FK RR+ LG TQ VG AL G
Sbjct: 173 AGGPHQPLSDISDDS--EQTCPDDLEGFAKQFKQRRIKLGYTQADVGVALGTLYG 225
Score = 33.5 bits (73), Expect = 0.16
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Frame = +2
Query: 512 YSQSAICRFEKLDITPKSAQKIKPVL-RTLDEGSRGKGT 625
+SQ+ ICRFE L ++ K+ K+KP+L + L+E G+
Sbjct: 228 FSQTTICRFEALQLSFKNMCKLKPLLFKWLEEADSTTGS 266
>M22363-2|AAA28159.1| 429|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 429
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 414 IKEFAKAFKLRRLGLGLTQTQVGQALSVTEGPHI 515
++ FA+ FK RR+ LG+TQ VG+AL+ + P +
Sbjct: 235 LETFAEHFKQRRIKLGVTQADVGKALAHLKMPGV 268
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 515 SQSAICRFEKLDITPKSAQKIKPVLRT 595
SQS ICRFE L ++ + +KP+L +
Sbjct: 272 SQSTICRFESLTLSHNNMVALKPILHS 298
>M22363-1|AAA28158.1| 467|Caenorhabditis elegans protein (
C.elegans unc-86 geneencoding two alternative proteins,
complete cds. ).
Length = 467
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 414 IKEFAKAFKLRRLGLGLTQTQVGQALSVTEGPHI 515
++ FA+ FK RR+ LG+TQ VG+AL+ + P +
Sbjct: 273 LETFAEHFKQRRIKLGVTQADVGKALAHLKMPGV 306
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 515 SQSAICRFEKLDITPKSAQKIKPVLRT 595
SQS ICRFE L ++ + +KP+L +
Sbjct: 310 SQSTICRFESLTLSHNNMVALKPILHS 336
>L10990-6|AAB59176.1| 467|Caenorhabditis elegans Uncoordinated
protein 86, isoform b protein.
Length = 467
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 414 IKEFAKAFKLRRLGLGLTQTQVGQALSVTEGPHI 515
++ FA+ FK RR+ LG+TQ VG+AL+ + P +
Sbjct: 273 LETFAEHFKQRRIKLGVTQADVGKALAHLKMPGV 306
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 515 SQSAICRFEKLDITPKSAQKIKPVLRT 595
SQS ICRFE L ++ + +KP+L +
Sbjct: 310 SQSTICRFESLTLSHNNMVALKPILHS 336
>L10990-5|AAB59175.1| 429|Caenorhabditis elegans Uncoordinated
protein 86, isoform a protein.
Length = 429
Score = 33.5 bits (73), Expect = 0.16
Identities = 15/34 (44%), Positives = 24/34 (70%)
Frame = +3
Query: 414 IKEFAKAFKLRRLGLGLTQTQVGQALSVTEGPHI 515
++ FA+ FK RR+ LG+TQ VG+AL+ + P +
Sbjct: 235 LETFAEHFKQRRIKLGVTQADVGKALAHLKMPGV 268
Score = 30.3 bits (65), Expect = 1.5
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = +2
Query: 515 SQSAICRFEKLDITPKSAQKIKPVLRT 595
SQS ICRFE L ++ + +KP+L +
Sbjct: 272 SQSTICRFESLTLSHNNMVALKPILHS 298
>Z78546-6|CAB54307.1| 642|Caenorhabditis elegans Hypothetical
protein M03B6.3 protein.
Length = 642
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 354 NQPTISQSSSNVVDGINLEDIKEFAKAFKLRRLG 455
+QP +++ VDG+ ++D +A+ F+L RLG
Sbjct: 119 SQPPTTKAKEMYVDGVKVKDWDRYARKFQLERLG 152
>Z78545-5|CAB01764.2| 642|Caenorhabditis elegans Hypothetical
protein M03B6.3 protein.
Length = 642
Score = 31.5 bits (68), Expect = 0.64
Identities = 12/34 (35%), Positives = 22/34 (64%)
Frame = +3
Query: 354 NQPTISQSSSNVVDGINLEDIKEFAKAFKLRRLG 455
+QP +++ VDG+ ++D +A+ F+L RLG
Sbjct: 119 SQPPTTKAKEMYVDGVKVKDWDRYARKFQLERLG 152
>U41624-4|AAF99945.1| 322|Caenorhabditis elegans Hypothetical
protein F46C8.7 protein.
Length = 322
Score = 31.5 bits (68), Expect = 0.64
Identities = 18/61 (29%), Positives = 33/61 (54%)
Frame = +2
Query: 440 TATTWSGTYADPSRPSPVGHRRTAYSQSAICRFEKLDITPKSAQKIKPVLRTLDEGSRGK 619
TA++ +G + ++PS T+ +Q C F ++ +TPK A+ I+ + + GS G
Sbjct: 257 TASSGNGECSSSNQPS------TSSNQPLACPFARMSLTPKDARVIESLSGSGGSGSSGN 310
Query: 620 G 622
G
Sbjct: 311 G 311
>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
protein Y40C5A.3 protein.
Length = 2344
Score = 29.9 bits (64), Expect = 2.0
Identities = 20/61 (32%), Positives = 33/61 (54%), Gaps = 2/61 (3%)
Frame = +3
Query: 210 TSHNASGAN*QRRQRTGPI--PSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSS 383
TSH + A + + P+ P+P P K S S +SP+ + + A +P +P+ SQ SS
Sbjct: 539 TSHEMAPAPAPQPSPSSPVYGPTPSEPAKPSMPSGESPAQPEPSIPAVNP-EPSPSQPSS 597
Query: 384 N 386
+
Sbjct: 598 S 598
>U39740-4|AAO91692.1| 417|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform c protein.
Length = 417
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +2
Query: 506 TAYSQSAICRFEKLDITPKSAQKIKPVLR 592
T +SQ+ I RFE L+++ K+ K++P+L+
Sbjct: 342 TDFSQTTISRFEALNLSFKNMCKLRPLLK 370
>U39740-3|AAA80426.2| 542|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform a protein.
Length = 542
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +2
Query: 506 TAYSQSAICRFEKLDITPKSAQKIKPVLR 592
T +SQ+ I RFE L+++ K+ K++P+L+
Sbjct: 329 TDFSQTTISRFEALNLSFKNMCKLRPLLK 357
>U39740-2|AAM69077.1| 540|Caenorhabditis elegans C.elegans homeobox
protein 18,isoform b protein.
Length = 540
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +2
Query: 506 TAYSQSAICRFEKLDITPKSAQKIKPVLR 592
T +SQ+ I RFE L+++ K+ K++P+L+
Sbjct: 327 TDFSQTTISRFEALNLSFKNMCKLRPLLK 355
>U16367-1|AAA52203.1| 542|Caenorhabditis elegans CEH-18 protein.
Length = 542
Score = 29.5 bits (63), Expect = 2.6
Identities = 12/29 (41%), Positives = 22/29 (75%)
Frame = +2
Query: 506 TAYSQSAICRFEKLDITPKSAQKIKPVLR 592
T +SQ+ I RFE L+++ K+ K++P+L+
Sbjct: 329 TDFSQTTISRFEALNLSFKNMCKLRPLLK 357
>AC025716-1|AAK39606.1| 788|Caenorhabditis elegans Hypothetical
protein Y39G10AR.11 protein.
Length = 788
Score = 29.1 bits (62), Expect = 3.4
Identities = 17/44 (38%), Positives = 27/44 (61%), Gaps = 3/44 (6%)
Frame = +2
Query: 317 IARRRRSVGRLTKPANDQPVFQQ--RSRW-DQLRRHQGIREGLQ 439
+A RRS+ RLT+ A +Q Q+ R RW DQ+ + + + E L+
Sbjct: 674 LAEARRSIARLTEDAKEQSEAQEFDRLRWNDQVDQLKEVNEELK 717
>AF067211-1|AAC16986.1| 455|Caenorhabditis elegans Hypothetical
protein B0205.10 protein.
Length = 455
Score = 28.7 bits (61), Expect = 4.5
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = +3
Query: 243 RRQRTGPIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPT 365
++Q P P+P AP PG P + A L S +PT
Sbjct: 66 QQQPEAPAPAPTAPDVQQPGPAPVPVPEPAQLAPQSAPEPT 106
>Z68108-10|CAF31490.1| 1888|Caenorhabditis elegans Hypothetical
protein T05A10.1g protein.
Length = 1888
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 255 TGPIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKA 434
T IP+P PV L+P +++ ++ + A N P+ +Q VV +L+ + A++
Sbjct: 1770 TTSIPAPQ-PVALTPEMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSLQQLHYVAQS 1828
>AY390544-1|AAQ94956.1| 160|Caenorhabditis elegans SMA-9 class IIa
protein.
Length = 160
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 255 TGPIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKA 434
T IP+P PV L+P +++ ++ + A N P+ +Q VV +L+ + A++
Sbjct: 42 TTSIPAPQ-PVALTPEMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSLQQLHYVAQS 100
>AY390543-1|AAQ94955.1| 251|Caenorhabditis elegans SMA-9 class IIa
protein.
Length = 251
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 255 TGPIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKA 434
T IP+P PV L+P +++ ++ + A N P+ +Q VV +L+ + A++
Sbjct: 133 TTSIPAPQ-PVALTPEMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSLQQLHYVAQS 191
>AY390542-1|AAQ94954.1| 468|Caenorhabditis elegans SMA-9 class IIa
protein.
Length = 468
Score = 28.3 bits (60), Expect = 6.0
Identities = 16/60 (26%), Positives = 31/60 (51%)
Frame = +3
Query: 255 TGPIPSPHAPVKLSPGSVKSPSHDDADLLADSPNQPTISQSSSNVVDGINLEDIKEFAKA 434
T IP+P PV L+P +++ ++ + A N P+ +Q VV +L+ + A++
Sbjct: 350 TTSIPAPQ-PVALTPEMIRALANAQTPVTASMTNTPSTAQFPVGVVSTPSLQQLHYVAQS 408
>U41544-1|AAA83183.2| 2275|Caenorhabditis elegans Hypothetical protein
M03A8.2 protein.
Length = 2275
Score = 27.9 bits (59), Expect = 7.9
Identities = 13/47 (27%), Positives = 23/47 (48%)
Frame = +3
Query: 576 SNRCFERWMKEAEEKVRIPVKNHLTDFIGIGAEQKAQTANIRSHFRP 716
S + F +W K+ + +P+ TD + G+ + A + HFRP
Sbjct: 1065 SAKDFGKWTKDCNQLEHVPI----TDELSSGSTEDAFAVALHMHFRP 1107
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,197,822
Number of Sequences: 27780
Number of extensions: 334166
Number of successful extensions: 1337
Number of sequences better than 10.0: 21
Number of HSP's better than 10.0 without gapping: 1234
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1335
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1735436670
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -