Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0579
         (715 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces p...    31   0.16 
SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr ...    29   0.50 
SPCC10H11.01 |prp11||ATP-dependent RNA helicase Prp11|Schizosacc...    25   8.1  

>SPBC146.07 |prp2|mis11|U2AF large subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 517

 Score = 31.1 bits (67), Expect = 0.16
 Identities = 26/110 (23%), Positives = 51/110 (46%), Gaps = 7/110 (6%)
 Frame = +2

Query: 254 MESRASPCRR*NRDFENCTAKQDPSK--LGLKT*TWHHGVERDHRGRQSGFEKRQRKPSI 427
           + S +S   + +RD+ +   +++     +G +    H+G ER  R R+   + R+ + S 
Sbjct: 7   LSSGSSRIPKRHRDYRDEEPRRERGSGGIGREDPRGHYGSERPRRRRRDESDFRRHRESR 66

Query: 428 PKN*ICDKNDRREDVFDHRRHHGRRVQKLGQMRN-----SESFRSIEERV 562
            ++   D+  RRE  +D       R   +G+ R+       S RSIE+ +
Sbjct: 67  ERSYREDERPRRERRYDDYEPRSLRYSSVGRSRSPPPSRERSVRSIEQEL 116


>SPAC26F1.08c |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 29.5 bits (63), Expect = 0.50
 Identities = 18/68 (26%), Positives = 36/68 (52%), Gaps = 3/68 (4%)
 Frame = +3

Query: 288 IATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNV---KESQVYQKTESVIKTT 458
           + +L T+L   +R +SDL  + G+    +I + +N  ++N     ES  +  + SVIK  
Sbjct: 176 VVSLVTILVPPMRMASDLVGQSGLDHLNKIMQSLNFSVENFFPSDESVSFSSSSSVIKRM 235

Query: 459 AEKTSSII 482
            ++  S++
Sbjct: 236 FKEHESVL 243


>SPCC10H11.01 |prp11||ATP-dependent RNA helicase
           Prp11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1014

 Score = 25.4 bits (53), Expect = 8.1
 Identities = 11/22 (50%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = +1

Query: 202 PDELAGLTPEQADQLRA--DGV 261
           P+EL  L+P + D+LRA  DG+
Sbjct: 385 PEELKNLSPAEVDELRASLDGI 406


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,600,242
Number of Sequences: 5004
Number of extensions: 50509
Number of successful extensions: 168
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 333194204
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)