Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0579
(715 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0437 - 28986459-28986524,28986606-28986731,28986842-289869... 31 0.91
08_02_0894 + 22346027-22347925 30 2.1
01_06_1155 - 34957402-34957824 29 2.8
03_05_0736 - 27254502-27255497 29 3.7
09_05_0015 - 20083143-20083308,20083645-20084017,20084362-200846... 29 4.8
06_03_1248 + 28685911-28687719 29 4.8
01_01_1127 + 8930593-8932681,8932812-8933401 28 6.4
10_08_0595 - 19074594-19075063,19075582-19075851,19075963-19075999 28 8.5
10_08_0472 - 18154797-18155048,18155332-18156318,18156424-181565... 28 8.5
05_04_0053 + 17520202-17520984 28 8.5
>02_05_0437 -
28986459-28986524,28986606-28986731,28986842-28986941,
28987583-28987660,28987857-28987937,28989488-28989624,
28989693-28989743,28989785-28989878,28990091-28990260
Length = 300
Score = 31.1 bits (67), Expect = 0.91
Identities = 15/73 (20%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Frame = +3
Query: 261 RELARVEDEIATLRTVLQSKIRQSSDLKRKLG-ITVWKEITEDVNQGLKNVKESQVYQKT 437
+E+ ++++EI +++ + + D+++++G +T ITE+++ ++N + KT
Sbjct: 205 QEVLQLDNEIVFNEAIIEEREQAIQDIQQQIGELTRTSFITEEIDTNIENSAAATKEAKT 264
Query: 438 ESVIKTTAEKTSS 476
E + +K++S
Sbjct: 265 ELAKASKTQKSNS 277
>08_02_0894 + 22346027-22347925
Length = 632
Score = 29.9 bits (64), Expect = 2.1
Identities = 19/81 (23%), Positives = 38/81 (46%)
Frame = +3
Query: 318 KIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITA 497
K++ S DL +G K +T N + S + ++ ++ + GG ++
Sbjct: 475 KVKDSPDLWNLIGDDYLKRLTGKFTMAATNYQRSAWLK----ILNCLRDEGLHVSGGFSS 530
Query: 498 GVSRSSVRCATRSLSAPSKNA 560
G+S+S++R RS +A + A
Sbjct: 531 GISKSALRERFRSFNAAFEEA 551
>01_06_1155 - 34957402-34957824
Length = 140
Score = 29.5 bits (63), Expect = 2.8
Identities = 23/81 (28%), Positives = 30/81 (37%)
Frame = +2
Query: 413 RKPSIPKN*ICDKNDRREDVFDHRRHHGRRVQKLGQMRNSESFRSIEERVGSAYENVKGK 592
R P P N + K R R G K+GQ R + + EER + G
Sbjct: 25 RPPPRPLNHVAGKPPNRCRFLRQIRRQGHSTTKVGQERRAAGWGDDEERWPWEETGLPGA 84
Query: 593 VASRSNSTQSFDEALRDASGA 655
RS S + D A R + A
Sbjct: 85 PPLRSVSVKLADHATRSSLAA 105
>03_05_0736 - 27254502-27255497
Length = 331
Score = 29.1 bits (62), Expect = 3.7
Identities = 15/36 (41%), Positives = 20/36 (55%)
Frame = -2
Query: 711 DSSVSRSGQRLVLGDGGEVAPLASRSASSKL*VEFD 604
D S R G R + G GG VA A+RSA+ + + D
Sbjct: 82 DLSAGRGGGRRLRGGGGSVAAAAARSAARQAGISGD 117
>09_05_0015 -
20083143-20083308,20083645-20084017,20084362-20084675,
20085164-20085512,20085678-20085837,20086307-20086618,
20086700-20086820,20087225-20087277
Length = 615
Score = 28.7 bits (61), Expect = 4.8
Identities = 19/55 (34%), Positives = 29/55 (52%), Gaps = 1/55 (1%)
Frame = -1
Query: 460 AVVFITDSVFWYTWLSLTFFKP*LTSSVI-SFHTVMPSLRFKSEL*RILLCSTVL 299
AV + SV++ W + ++F+P L SSV+ VM ++ F ILL VL
Sbjct: 276 AVAQVFSSVYFSAWSNRSYFRPLLFSSVVLLLGNVMYAMAFDLGSLTILLLGRVL 330
>06_03_1248 + 28685911-28687719
Length = 602
Score = 28.7 bits (61), Expect = 4.8
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = -3
Query: 263 ATPSARNWSACSGVRPANSSGVCMSPATPVPDIASSAV 150
ATP+A + +A PA++S V ATP A AV
Sbjct: 169 ATPAATSAAAKDAATPASTSAVRKKAATPATSAAGKAV 206
>01_01_1127 + 8930593-8932681,8932812-8933401
Length = 892
Score = 28.3 bits (60), Expect = 6.4
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 3/79 (3%)
Frame = +3
Query: 270 ARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKNVKESQVYQKTE 440
AR++ EI R Q +DLKRK L W+ I E + L+ K+ + ++
Sbjct: 135 ARLKQEIERYRASNPKITEQFADLKRKLVDLSAQEWESIPEIGDYSLRRNKKRR-FESFV 193
Query: 441 SVIKTTAEKTSSIIGGITA 497
V T EK G +TA
Sbjct: 194 PVPDTLLEKARQEQGHVTA 212
>10_08_0595 - 19074594-19075063,19075582-19075851,19075963-19075999
Length = 258
Score = 27.9 bits (59), Expect = 8.5
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -2
Query: 708 SSVSRSGQRLVLGDGGEVAPLASRSAS 628
+SV+R G +L LGDG AP SAS
Sbjct: 10 NSVARDGIQLPLGDGSSSAPAHPSSAS 36
>10_08_0472 - 18154797-18155048,18155332-18156318,18156424-18156546,
18156654-18156808,18157611-18157824,18158977-18159077,
18159162-18159285,18159584-18159655,18159897-18159961,
18160167-18160233,18160917-18161015,18161099-18161167,
18161286-18161409,18162507-18162566,18163111-18163634
Length = 1011
Score = 27.9 bits (59), Expect = 8.5
Identities = 18/76 (23%), Positives = 37/76 (48%), Gaps = 1/76 (1%)
Frame = +3
Query: 267 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDV-NQGLKNVKESQVYQKTES 443
++R + I +R + ++ + S + L ++K+ E++ + G E +VY K +
Sbjct: 829 ISRGQIGIQQVRGLKEANFQLDSLIAEPLRENIYKKSVEEIFSSGTGEFDEEEVYVKIPA 888
Query: 444 VIKTTAEKTSSIIGGI 491
+ AEK SI+ I
Sbjct: 889 DLIINAEKAKSIVQDI 904
>05_04_0053 + 17520202-17520984
Length = 260
Score = 27.9 bits (59), Expect = 8.5
Identities = 12/25 (48%), Positives = 17/25 (68%)
Frame = -1
Query: 529 VAHLTELLDTPAVMPPMIEDVFSAV 455
VA+ E + PA MPP+++D SAV
Sbjct: 142 VAYRGEPITAPAPMPPLVQDADSAV 166
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,717,576
Number of Sequences: 37544
Number of extensions: 321275
Number of successful extensions: 962
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 939
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 962
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1851002996
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -