Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0579
(715 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08) 54 9e-08
SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07) 31 0.93
SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20) 30 1.6
SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.8
SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7) 29 3.7
SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.7
SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06) 29 4.9
SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05) 28 6.5
SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055) 28 6.5
SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22) 28 6.5
SB_536| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 8.6
>SB_21533| Best HMM Match : TPD52 (HMM E-Value=5e-08)
Length = 829
Score = 54.4 bits (125), Expect = 9e-08
Identities = 30/79 (37%), Positives = 44/79 (55%), Gaps = 7/79 (8%)
Frame = +3
Query: 267 LARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQK---- 434
L +E+EI TL+ L K Q +DLKR+LGIT W +I E + V++S+ Y K
Sbjct: 73 LRHIEEEITTLKQALARKENQLADLKRELGITAWSQIKEGLGNTYHGVQQSRAYNKLSQG 132
Query: 435 ---TESVIKTTAEKTSSII 482
T+ V+ +EKT S +
Sbjct: 133 ASATKVVLVDASEKTVSAV 151
>SB_10587| Best HMM Match : DGCR6 (HMM E-Value=8.6e-07)
Length = 423
Score = 31.1 bits (67), Expect = 0.93
Identities = 20/79 (25%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +2
Query: 365 VERDHRGRQSGFEKRQRKPS-IPKN*ICDKNDRRE-DVFDHRRHHGRRVQKLGQMRNSES 538
V++ + + EK Q +P IP ++ D++E + HR HH V+K + E
Sbjct: 283 VQKTNEEDKEEIEKNQHRPHHIPIVEKTNEEDKKEIEKNQHRPHHIPIVEKTNEEDKEEF 342
Query: 539 FRSIEERVGSAYENVKGKV 595
F+ +E+R+ + ++ K+
Sbjct: 343 FQKLEQRLETEITSMDQKL 361
>SB_54269| Best HMM Match : M (HMM E-Value=8.1e-20)
Length = 3489
Score = 30.3 bits (65), Expect = 1.6
Identities = 20/86 (23%), Positives = 44/86 (51%)
Frame = +3
Query: 264 ELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTES 443
E+ ++++ + L+ Q+K R+ + L T E +ED+ L++ +S+V QKT+
Sbjct: 2831 EIQQMKEHVIALQE--QAKRREKELHAQLLAKTRQLEQSEDITDSLRDAIDSEVAQKTDL 2888
Query: 444 VIKTTAEKTSSIIGGITAGVSRSSVR 521
+E+T ++ + ++R R
Sbjct: 2889 TNTLNSERT--LVSDLKNALAREKAR 2912
>SB_45827| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2047
Score = 29.5 bits (63), Expect = 2.8
Identities = 27/117 (23%), Positives = 53/117 (45%), Gaps = 3/117 (2%)
Frame = +3
Query: 285 EIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAE 464
+ L+T L+ + DL+ G++ W + Q ++ + + + KT+ E
Sbjct: 995 DAVALQTCLEGLVPSVQDLQDHDGVSRWCARVTCLRQTVETMTSKENFDKTDEKSGGYGE 1054
Query: 465 KTSSIIGGITAGVSRSS-VRCATRSLSAPSKNA--SVRLMKTSRVK*LLDRTRLRAS 626
+T +II + R+S VR +++P +A S L K ++ L D T + A+
Sbjct: 1055 RTQNIIKHCWSLWQRASIVRLFVEHVTSPDDHAVNSANLQKLWKI--LGDETDMMAN 1109
>SB_54844| Best HMM Match : Microvir_J (HMM E-Value=1.7)
Length = 189
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/42 (30%), Positives = 29/42 (69%)
Frame = +3
Query: 213 GRPHTRAGRPVTR*WSRELARVEDEIATLRTVLQSKIRQSSD 338
GRP+TR + VT + ++ R+ED+ ++ T+L+ +++ +S+
Sbjct: 149 GRPYTRKSQHVTFSENEQIIRIEDDQVSM-TLLRKRLKFASE 189
>SB_26915| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3934
Score = 29.1 bits (62), Expect = 3.7
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = +3
Query: 216 RPHTRAGRPVTR*WSRELARVED 284
+P TR G PVTR W R RV D
Sbjct: 3900 KPLTRRGNPVTRAWRRLRERVRD 3922
>SB_29594| Best HMM Match : Pox_A_type_inc (HMM E-Value=8.4e-06)
Length = 1292
Score = 28.7 bits (61), Expect = 4.9
Identities = 18/57 (31%), Positives = 30/57 (52%), Gaps = 8/57 (14%)
Frame = +3
Query: 276 VEDEIATLRTVLQSKIRQSSDLKRKL--------GITVWKEITEDVNQGLKNVKESQ 422
+E+EI + L+ R+++DLK KL G V K++T V + +N+K Q
Sbjct: 138 LEEEITAKKAALKQISRENTDLKSKLELLMKDQSGAAVIKDLTRQVEELRENLKAKQ 194
>SB_54090| Best HMM Match : Pyr_redox_2 (HMM E-Value=1.5e-05)
Length = 700
Score = 28.3 bits (60), Expect = 6.5
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 1/64 (1%)
Frame = +3
Query: 381 EDVNQGLKNVKESQVYQKTESVIKTTAEKTSSII-GGITAGVSRSSVRCATRSLSAPSKN 557
EDV Q L +K ++ + E +T A + GG AG++ ++V + L+ PS+
Sbjct: 434 EDVKQALAPIKFNK-WGLPEVSAETMATSAEGVFCGGDLAGIANTTVESSLHGLTIPSEP 492
Query: 558 ASVR 569
A R
Sbjct: 493 ALPR 496
>SB_39560| Best HMM Match : zf-C3HC4 (HMM E-Value=0.00055)
Length = 545
Score = 28.3 bits (60), Expect = 6.5
Identities = 11/50 (22%), Positives = 25/50 (50%)
Frame = +2
Query: 455 DRREDVFDHRRHHGRRVQKLGQMRNSESFRSIEERVGSAYENVKGKVASR 604
D + DH H GR Q++ + E+ + I++++ S ++ + +R
Sbjct: 221 DMNTESLDHPYHQGRSDQRITWRQRREALQRIQDQIRSCVQDTSDEALAR 270
>SB_9715| Best HMM Match : F5_F8_type_C (HMM E-Value=2.4e-22)
Length = 431
Score = 28.3 bits (60), Expect = 6.5
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +2
Query: 359 HGVERDHRGRQSGFEKRQRKPSIPKN*ICDKND 457
HG RG Q+ +KR P +PK+ + K D
Sbjct: 369 HGENMIRRGSQASTQKRNMTPIVPKHVMAPKRD 401
>SB_536| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 143
Score = 27.9 bits (59), Expect = 8.6
Identities = 15/39 (38%), Positives = 22/39 (56%)
Frame = +3
Query: 399 LKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGVSRSS 515
L N K +KT K A+KTS+++ G A ++RSS
Sbjct: 31 LPNTKYYVCVKKTRPNAKHCAQKTSNLLVGAIANLARSS 69
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,215,569
Number of Sequences: 59808
Number of extensions: 366841
Number of successful extensions: 1214
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1214
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 1889780269
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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