Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0579
         (715 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical pr...    67   1e-11
U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical pr...    32   0.35 
AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical ...    32   0.47 
AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical...    28   7.6  
AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical...    28   7.6  
AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical ...    28   7.6  

>Z68105-1|CAA92122.2|  195|Caenorhabditis elegans Hypothetical
           protein F13E6.1 protein.
          Length = 195

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 28/67 (41%), Positives = 49/67 (73%)
 Frame = +3

Query: 264 ELARVEDEIATLRTVLQSKIRQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTES 443
           EL + E+EI+TL+ VL ++ + +++LKRKLG+T + E+++D+N+ LK V ++  YQKT  
Sbjct: 67  ELDKTEEEISTLKQVLSARQKHAAELKRKLGLTPFSELSQDINRSLKTVTDTDAYQKTAE 126

Query: 444 VIKTTAE 464
           V   T++
Sbjct: 127 VAAATSD 133



 Score = 31.1 bits (67), Expect = 0.82
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +2

Query: 506 QKLGQMRNSESFRSIEERVGSAYENVK 586
           +K   MRNS  F+S E ++GSA  N K
Sbjct: 137 EKWNDMRNSSLFKSFESKLGSALNNAK 163


>U40946-4|AAA81726.1|  414|Caenorhabditis elegans Hypothetical
           protein W05H9.1 protein.
          Length = 414

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 19/76 (25%), Positives = 40/76 (52%), Gaps = 9/76 (11%)
 Frame = +3

Query: 267 LARVEDEIATLRTVLQSKIRQSSDLKRK---LGITVWKEITEDVNQGLKNV------KES 419
           L++V D +      L+ + ++ ++ K+K     I  WKE+++ V + +++V      KE 
Sbjct: 69  LSKVSDAVKQRADELEKEKQEKAEAKKKEAEAAIEKWKEVSQQVGEFVESVKEKKQAKEQ 128

Query: 420 QVYQKTESVIKTTAEK 467
           +  QK +  +KT  +K
Sbjct: 129 EKQQKIDDFVKTFTDK 144


>AL110487-2|CAB54425.1|  445|Caenorhabditis elegans Hypothetical
           protein Y39E4B.2 protein.
          Length = 445

 Score = 31.9 bits (69), Expect = 0.47
 Identities = 18/66 (27%), Positives = 33/66 (50%)
 Frame = +3

Query: 324 RQSSDLKRKLGITVWKEITEDVNQGLKNVKESQVYQKTESVIKTTAEKTSSIIGGITAGV 503
           ++ S LK KLGIT W ++ + + +  K +K S    ++ S +        S     + G+
Sbjct: 204 KEYSRLKMKLGITSWMKLKDPIEELKKIIKTSLQAVESSSGVDEIVHTDHSAQQLASRGM 263

Query: 504 SRSSVR 521
            RSS++
Sbjct: 264 QRSSIK 269


>AL117195-12|CAB60765.1|  425|Caenorhabditis elegans Hypothetical
           protein Y57A10A.19 protein.
          Length = 425

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 22/79 (27%), Positives = 31/79 (39%)
 Frame = +2

Query: 404 KRQRKPSIPKN*ICDKNDRREDVFDHRRHHGRRVQKLGQMRNSESFRSIEERVGSAYENV 583
           K QRKP   +    ++ D+RED  D R    R  +   + R S   R++  R        
Sbjct: 262 KDQRKPREDRRRSVERQDQREDRRDRR----RSPEDPRERRRSPEDRTVRRRSPERRRQQ 317

Query: 584 KGKVASRSNSTQSFDEALR 640
           +     R  S Q  DE  R
Sbjct: 318 RSPSVERRKSPQRRDERRR 336


>AL023835-10|CAA19494.2|  691|Caenorhabditis elegans Hypothetical
           protein Y37A1B.11 protein.
          Length = 691

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/37 (37%), Positives = 19/37 (51%)
 Frame = -3

Query: 263 ATPSARNWSACSGVRPANSSGVCMSPATPVPDIASSA 153
           A+ S  + S  SG  P + +GVC  P+T    I S A
Sbjct: 626 ASTSGASTSKPSGTSPESGAGVCTGPSTRSQSITSVA 662


>AC006712-8|AAU20838.1|  450|Caenorhabditis elegans Hypothetical
           protein Y119C1B.3 protein.
          Length = 450

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 18/60 (30%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
 Frame = +2

Query: 356 HHGVERDHRGRQSGFEKRQRKPSIPKN*-ICDKNDRREDVFDHRRHHGRRVQKLGQMRNS 532
           ++G E   + R+S      R P   ++  I   +D RE +F  R HHGRR+ +L  +  +
Sbjct: 392 NNGNETPKKTRRSSSTTPTRTPKQRRSSRIRSISDEREQLFP-RHHHGRRLDRLDTLEET 450


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,359,901
Number of Sequences: 27780
Number of extensions: 279546
Number of successful extensions: 1001
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 951
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1001
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1666201324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)