Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0578
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharo...    29   0.89 
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    28   1.6  
SPBC3E7.01 |fab1|ste12, SPBC6B1.11c|1-phosphatidylinositol-3-pho...    27   2.1  
SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr 2|...    26   4.7  

>SPCC63.04 |mok14||alpha-1,3-glucan synthase Mok14|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1369

 Score = 28.7 bits (61), Expect = 0.89
 Identities = 16/39 (41%), Positives = 20/39 (51%)
 Frame = -1

Query: 704  LWQIFLTRDSIIVTAWLEIFCVLLSGVNLHLTRRRVCGI 588
            LW+I +   S +V AWL IF VL    N H     V G+
Sbjct: 1190 LWKIVVMTVSFLVGAWLIIFYVLRKLSNKHTWMVPVLGL 1228


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 15/53 (28%), Positives = 28/53 (52%)
 Frame = -3

Query: 348 NIIMDPVNPTILQHQ*TPGDDGQKPFSKTYNTDAQRPRVALLTPTYRQRLPML 190
           ++I++PV   + Q+   P    ++     + +  + P VA+LTP   Q LP+L
Sbjct: 361 DLIVNPVLAFVEQNIQNPDWHQREAAVMAFGSVLEGPNVAMLTPLVNQALPVL 413


>SPBC3E7.01 |fab1|ste12,
           SPBC6B1.11c|1-phosphatidylinositol-3-phosphate 5-kinase
           Fab1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1932

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 15/39 (38%), Positives = 21/39 (53%)
 Frame = -2

Query: 598 SVASPKKPFATLRELSYLHVASV*KLKIDSATVVTSTLQ 482
           + ASP  P  T   L  LH +S  ++  DS  VV +TL+
Sbjct: 8   TAASPTFPVETSHRLDTLHTSSTEQIIKDSENVVHTTLK 46


>SPBC18E5.14c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 127

 Score = 26.2 bits (55), Expect = 4.7
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 10  SLVNCYPSYDMFFCYCPHQTSLFNSIF 90
           S V     Y ++FCYC +  +LF  IF
Sbjct: 44  SFVRGVKRYLIYFCYCANFIALFRVIF 70


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,886,826
Number of Sequences: 5004
Number of extensions: 58080
Number of successful extensions: 145
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)