Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0578
         (722 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2, plast...    28   5.5  
At1g24290.1 68414.m03065 AAA-type ATPase family protein similar ...    28   5.5  
At3g24870.1 68416.m03119 expressed protein                             28   7.2  
At2g24740.1 68415.m02955 SET domain-containing protein (SUVH8) i...    27   9.5  

>At4g16155.1 68417.m02451 dihydrolipoamide dehydrogenase 2,
           plastidic / lipoamide dehydrogenase 2 (PTLPD2) identical
           to plastidic lipoamide dehydrogenase from Arabidopsis
           thaliana [gi:7159284]
          Length = 567

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/28 (35%), Positives = 17/28 (60%)
 Frame = -1

Query: 602 RVCGIAKEAFCHIERIKLPPCSFGVKAK 519
           R CG+ +EAFC     +L  C F ++++
Sbjct: 35  RFCGLRREAFCFSPSKQLTSCRFHIQSR 62


>At1g24290.1 68414.m03065 AAA-type ATPase family protein similar to
           Werner helicase interacting protein [Homo sapiens]
           GI:14349166; contains Pfam profiles PF00004: ATPase
           family associated with various cellular activities
           (AAA), PF00627: UBA/TS-N domain; contains
           ATP/GTP-binding site motif A (P-loop)
          Length = 525

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +1

Query: 232 DPRALGVSVVCFRKRFLSVVPRCSLVLQNC 321
           DP AL  +V C++      +P C+++L  C
Sbjct: 398 DPSALTQAVACYQASHFLGMPECNVILAQC 427


>At3g24870.1 68416.m03119 expressed protein
          Length = 1841

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 13/29 (44%), Positives = 18/29 (62%)
 Frame = -2

Query: 247  PAPEGRAAHANLSSTATDVTNSDNTDGRG 161
            PA E  +  A++ STA+ V N+ NTD  G
Sbjct: 1739 PALEPPSCVASVQSTASKVVNNSNTDSAG 1767


>At2g24740.1 68415.m02955 SET domain-containing protein (SUVH8)
           identical to SUVH8 [Arabidopsis thaliana] GI:13517757;
           contains Pfam profiles PF00856: SET domain, PF05033:
           Pre-SET motif, PF02182: YDG/SRA domain
          Length = 755

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = +1

Query: 298 CSLVLQNCRVDRVHDDIFVTKRRLLY 375
           C+ +L+NC     HD+I V ++ L+Y
Sbjct: 539 CTCILKNCGQLPYHDNILVCRKPLIY 564


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,849,675
Number of Sequences: 28952
Number of extensions: 296485
Number of successful extensions: 669
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 669
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1575119672
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)