Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0576
         (472 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    31   0.067
SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe...    29   0.27 
SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo...    27   1.1  
SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy...    27   1.1  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   1.9  
SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces...    25   4.4  
SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p...    25   4.4  
SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual       25   4.4  

>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 31.5 bits (68), Expect = 0.067
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +3

Query: 123 RESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           +E  + +      KYGK+  + V  N  G  F++FEN   AE A+
Sbjct: 527 QELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAI 571


>SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 565

 Score = 29.5 bits (63), Expect = 0.27
 Identities = 22/79 (27%), Positives = 35/79 (44%)
 Frame = -1

Query: 256 TASSASCKFSNSMKAKPGGFSATQTEFSFPYLFELAFEIFLLDSLDETADVHASTTRTHG 77
           TA++ + +FS +  A P  F+  + E S P        +F   +   +AD    T +TH 
Sbjct: 253 TAATTTNQFSFNTAANPFAFAKKENEESKPLT-----PVFSFSTTMASADASKETKQTHE 307

Query: 76  LV*KKNRMFKYENNELTLN 20
               K+   K  NNE + N
Sbjct: 308 TKDSKSEESKPSNNEKSEN 326


>SPBC1773.09c |mug184||meiotically upregulated gene
           Mug184|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 551

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = -1

Query: 235 KFSNSMKAKPGGFSATQTEFSFPYLFELAFE 143
           KF++S K     F+ T+TE S PY F    E
Sbjct: 280 KFNSSFKTSNDFFTFTKTEESSPYSFSFKLE 310


>SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 478

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = +2

Query: 98  RVYVGGLVEGIKKEDLEREF 157
           R+YVGGL   I+  DLE  F
Sbjct: 6   RIYVGGLSSSIESSDLESRF 25


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 2493

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 13/44 (29%), Positives = 22/44 (50%)
 Frame = -2

Query: 264  IALPHLPPPASSQIL*KRNLGDLVLPKLSLVFHIYSNSRSRSSF 133
            + + HL    S   L ++ L +LV+P ++L+F   SN      F
Sbjct: 1153 LVITHLQSEESESQLREKILANLVMPNITLIFASLSNILKNPQF 1196


>SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 609

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 13/30 (43%), Positives = 18/30 (60%)
 Frame = +3

Query: 171 KLNSVWVALNPPGFAFIEFENLQEAEDAVA 260
           K N    + +P  FAFI FEN   A++A+A
Sbjct: 55  KKNKSTDSKSPTLFAFITFENKCSADNAIA 84


>SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 275

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 9/15 (60%), Positives = 14/15 (93%)
 Frame = +3

Query: 210 FAFIEFENLQEAEDA 254
           FAF+E+E+ ++AEDA
Sbjct: 49  FAFVEYEDSRDAEDA 63


>SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score = 25.4 bits (53), Expect = 4.4
 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%)
 Frame = -1

Query: 214 AKPGGFSATQTEFSFPYLFELAFEIFLLDSLDETADVHAST----TRTHGL 74
           +K  GF     +   P++   A E  L DSL E  +++  T     R HG+
Sbjct: 137 SKNNGFHKPTDKIKIPFINNTAHESDLHDSLQEAINLYPDTCAVIVRDHGI 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,507,944
Number of Sequences: 5004
Number of extensions: 26978
Number of successful extensions: 108
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)