BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= e40h0576 (472 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce... 31 0.067 SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe... 29 0.27 SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizo... 27 1.1 SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomy... 27 1.1 SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ... 27 1.9 SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces... 25 4.4 SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces p... 25 4.4 SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual 25 4.4 >SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces pombe|chr 1|||Manual Length = 604 Score = 31.5 bits (68), Expect = 0.067 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +3 Query: 123 RESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257 +E + + KYGK+ + V N G F++FEN AE A+ Sbjct: 527 QELEQDVKEECDEKYGKVVHIAVVPNELGQIFVKFENADFAEKAI 571 >SPCC18B5.07c |nup61||nucleoporin Nup61|Schizosaccharomyces pombe|chr 3|||Manual Length = 565 Score = 29.5 bits (63), Expect = 0.27 Identities = 22/79 (27%), Positives = 35/79 (44%) Frame = -1 Query: 256 TASSASCKFSNSMKAKPGGFSATQTEFSFPYLFELAFEIFLLDSLDETADVHASTTRTHG 77 TA++ + +FS + A P F+ + E S P +F + +AD T +TH Sbjct: 253 TAATTTNQFSFNTAANPFAFAKKENEESKPLT-----PVFSFSTTMASADASKETKQTHE 307 Query: 76 LV*KKNRMFKYENNELTLN 20 K+ K NNE + N Sbjct: 308 TKDSKSEESKPSNNEKSEN 326 >SPBC1773.09c |mug184||meiotically upregulated gene Mug184|Schizosaccharomyces pombe|chr 2|||Manual Length = 551 Score = 27.5 bits (58), Expect = 1.1 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = -1 Query: 235 KFSNSMKAKPGGFSATQTEFSFPYLFELAFE 143 KF++S K F+ T+TE S PY F E Sbjct: 280 KFNSSFKTSNDFFTFTKTEESSPYSFSFKLE 310 >SPBP16F5.06 |||ribosome biogenesis protein Nop6|Schizosaccharomyces pombe|chr 2|||Manual Length = 478 Score = 27.5 bits (58), Expect = 1.1 Identities = 11/20 (55%), Positives = 13/20 (65%) Frame = +2 Query: 98 RVYVGGLVEGIKKEDLEREF 157 R+YVGGL I+ DLE F Sbjct: 6 RIYVGGLSSSIESSDLESRF 25 >SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces pombe|chr 2|||Manual Length = 2493 Score = 26.6 bits (56), Expect = 1.9 Identities = 13/44 (29%), Positives = 22/44 (50%) Frame = -2 Query: 264 IALPHLPPPASSQIL*KRNLGDLVLPKLSLVFHIYSNSRSRSSF 133 + + HL S L ++ L +LV+P ++L+F SN F Sbjct: 1153 LVITHLQSEESESQLREKILANLVMPNITLIFASLSNILKNPQF 1196 >SPAC343.07 |mug28||RNA-binding protein Mug28|Schizosaccharomyces pombe|chr 1|||Manual Length = 609 Score = 25.4 bits (53), Expect = 4.4 Identities = 13/30 (43%), Positives = 18/30 (60%) Frame = +3 Query: 171 KLNSVWVALNPPGFAFIEFENLQEAEDAVA 260 K N + +P FAFI FEN A++A+A Sbjct: 55 KKNKSTDSKSPTLFAFITFENKCSADNAIA 84 >SPBC11C11.08 |srp1||SR family protein Srp1|Schizosaccharomyces pombe|chr 2|||Manual Length = 275 Score = 25.4 bits (53), Expect = 4.4 Identities = 9/15 (60%), Positives = 14/15 (93%) Frame = +3 Query: 210 FAFIEFENLQEAEDA 254 FAF+E+E+ ++AEDA Sbjct: 49 FAFVEYEDSRDAEDA 63 >SPAC20H4.05c |||adducin|Schizosaccharomyces pombe|chr 1|||Manual Length = 221 Score = 25.4 bits (53), Expect = 4.4 Identities = 15/51 (29%), Positives = 23/51 (45%), Gaps = 4/51 (7%) Frame = -1 Query: 214 AKPGGFSATQTEFSFPYLFELAFEIFLLDSLDETADVHAST----TRTHGL 74 +K GF + P++ A E L DSL E +++ T R HG+ Sbjct: 137 SKNNGFHKPTDKIKIPFINNTAHESDLHDSLQEAINLYPDTCAVIVRDHGI 187 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,507,944 Number of Sequences: 5004 Number of extensions: 26978 Number of successful extensions: 108 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 103 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 108 length of database: 2,362,478 effective HSP length: 67 effective length of database: 2,027,210 effective search space used: 180421690 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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