Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0576
         (472 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)                 53   1e-07
SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)              51   6e-07
SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)              49   2e-06
SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)                 30   1.1  
SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)                        29   1.9  
SB_13046| Best HMM Match : La (HMM E-Value=5e-23)                      28   3.4  
SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)                       28   4.5  
SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)                 27   5.9  

>SB_59562| Best HMM Match : RRM_1 (HMM E-Value=6.1e-23)
          Length = 201

 Score = 53.2 bits (122), Expect = 1e-07
 Identities = 20/32 (62%), Positives = 29/32 (90%)
 Frame = +3

Query: 162 KYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           K+G+L+ VWVA NPPGFAF+E+E+ ++AE+AV
Sbjct: 26  KFGRLSKVWVARNPPGFAFVEYEDYRDAEEAV 57



 Score = 29.9 bits (64), Expect = 1.1
 Identities = 18/72 (25%), Positives = 29/72 (40%)
 Frame = +2

Query: 95  TRVYVGGLVEGIKKEDLEREFE*IWKTKLSLGSTKSPRFRFHRI*ELAGGGRCGSAMNGT 274
           T++YVG L       +LER FE   +      +   P F F    +          ++G 
Sbjct: 4   TKLYVGNLGRNADSSELERAFEKFGRLSKVWVARNPPGFAFVEYEDYRDAEEAVRELDGA 63

Query: 275 EMLGATLKVEIS 310
            +   T++VE S
Sbjct: 64  NVCDRTIRVEFS 75


>SB_11682| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 184

 Score = 50.8 bits (116), Expect = 6e-07
 Identities = 24/49 (48%), Positives = 32/49 (65%)
 Frame = +3

Query: 111 AVSSRESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           ++    S+R+I N     YG L  VWVA NPPGFAF  F++ ++AEDAV
Sbjct: 38  SLGDNASKREIEN-EFGYYGPLKDVWVARNPPGFAFCIFDDRRDAEDAV 85


>SB_11683| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 23/48 (47%), Positives = 30/48 (62%)
 Frame = +3

Query: 114 VSSRESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           +    S+R+I       +G L  VWVA NPPGFAF  FE+ ++AEDAV
Sbjct: 9   IGDNASKREIEREFET-FGPLRDVWVARNPPGFAFCVFEDRRDAEDAV 55



 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/73 (23%), Positives = 33/73 (45%)
 Frame = +2

Query: 95  TRVYVGGLVEGIKKEDLEREFE*IWKTKLSLGSTKSPRFRFHRI*ELAGGGRCGSAMNGT 274
           +RVY+G + +   K ++EREFE     +    +   P F F    +          ++G 
Sbjct: 2   SRVYIGNIGDNASKREIEREFETFGPLRDVWVARNPPGFAFCVFEDRRDAEDAVRELDGR 61

Query: 275 EMLGATLKVEISR 313
            + G   +VE+++
Sbjct: 62  YICGQRARVELAK 74


>SB_40573| Best HMM Match : RRM_1 (HMM E-Value=1.8e-39)
          Length = 507

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 12/18 (66%), Positives = 16/18 (88%)
 Frame = +3

Query: 204 PGFAFIEFENLQEAEDAV 257
           P FAF+EFE+ ++AEDAV
Sbjct: 300 PPFAFVEFEDPRDAEDAV 317


>SB_2700| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 593

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +3

Query: 207 GFAFIEFENLQEAEDAVA 260
           G+ FIE+EN Q A DA+A
Sbjct: 241 GYGFIEYENQQSANDAIA 258


>SB_13046| Best HMM Match : La (HMM E-Value=5e-23)
          Length = 442

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/17 (70%), Positives = 14/17 (82%)
 Frame = +3

Query: 207 GFAFIEFENLQEAEDAV 257
           GFAFIEFE+ Q+AE  V
Sbjct: 130 GFAFIEFESKQQAEHVV 146


>SB_41866| Best HMM Match : RRM_1 (HMM E-Value=0)
          Length = 718

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 4/34 (11%)
 Frame = +3

Query: 168 GKLNSVWVALNPPG----FAFIEFENLQEAEDAV 257
           GK+ S+ V  +P G    F F+ FE  +EAE+AV
Sbjct: 133 GKIVSLKVMTDPEGKSKGFGFVSFETPEEAEEAV 166


>SB_44114| Best HMM Match : RRM_1 (HMM E-Value=9.9e-35)
          Length = 929

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = +3

Query: 165 YGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           YGK+  + +     G+ F+EF++ ++AEDAV
Sbjct: 712 YGKIRDISLKR---GYGFVEFDDHRDAEDAV 739


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,029,377
Number of Sequences: 59808
Number of extensions: 201225
Number of successful extensions: 519
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 473
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 518
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 982083920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)