Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0576
         (472 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41007-10|AAL32214.1|  118|Caenorhabditis elegans Sr protein (sp...    50   8e-07
U41007-9|AAL32213.1|  153|Caenorhabditis elegans Sr protein (spl...    50   8e-07
U41007-8|AAA82270.1|  179|Caenorhabditis elegans Sr protein (spl...    50   8e-07
Z99279-4|CAB16494.1|  121|Caenorhabditis elegans Hypothetical pr...    38   0.003
AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical...    34   0.059
AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.        34   0.059
Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical pr...    32   0.18 
U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein (sp...    32   0.18 
U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein (sp...    32   0.18 
U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein (spl...    32   0.18 
Z66521-4|CAD59160.1|  150|Caenorhabditis elegans Hypothetical pr...    30   0.73 
Z66521-3|CAD59159.1|  148|Caenorhabditis elegans Hypothetical pr...    30   0.73 
Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical pr...    30   0.73 
Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical pr...    29   1.7  
Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical pr...    29   1.7  
AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine re...    29   2.2  
U88175-6|AAB42283.1|  234|Caenorhabditis elegans Hypothetical pr...    27   9.0  
U55857-6|AAA98032.2|  206|Caenorhabditis elegans Rnp (rrm rna bi...    27   9.0  

>U41007-10|AAL32214.1|  118|Caenorhabditis elegans Sr protein
           (splicing factor) protein6, isoform c protein.
          Length = 118

 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 17/33 (51%), Positives = 29/33 (87%)
 Frame = +3

Query: 159 NKYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           +++G++  VWVA  PPGFAF+E++++++AEDAV
Sbjct: 24  DRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAV 56



 Score = 32.7 bits (71), Expect = 0.14
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 98  RVYVGGLVEGIKKEDLEREFE*IWKTKLSLGSTKSPRFRFHRI*ELAGGGRCGSAMNGTE 277
           +VYVGGL      ++LE  F+   + +    + + P F F    ++        A++G+ 
Sbjct: 4   KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63

Query: 278 MLGATLKVEIS 310
           + G   +VE+S
Sbjct: 64  ICGVRARVELS 74


>U41007-9|AAL32213.1|  153|Caenorhabditis elegans Sr protein
           (splicing factor) protein6, isoform b protein.
          Length = 153

 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 17/33 (51%), Positives = 29/33 (87%)
 Frame = +3

Query: 159 NKYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           +++G++  VWVA  PPGFAF+E++++++AEDAV
Sbjct: 24  DRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAV 56



 Score = 32.7 bits (71), Expect = 0.14
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 98  RVYVGGLVEGIKKEDLEREFE*IWKTKLSLGSTKSPRFRFHRI*ELAGGGRCGSAMNGTE 277
           +VYVGGL      ++LE  F+   + +    + + P F F    ++        A++G+ 
Sbjct: 4   KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63

Query: 278 MLGATLKVEIS 310
           + G   +VE+S
Sbjct: 64  ICGVRARVELS 74


>U41007-8|AAA82270.1|  179|Caenorhabditis elegans Sr protein
           (splicing factor) protein6, isoform a protein.
          Length = 179

 Score = 50.0 bits (114), Expect = 8e-07
 Identities = 17/33 (51%), Positives = 29/33 (87%)
 Frame = +3

Query: 159 NKYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           +++G++  VWVA  PPGFAF+E++++++AEDAV
Sbjct: 24  DRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAV 56



 Score = 32.7 bits (71), Expect = 0.14
 Identities = 18/71 (25%), Positives = 34/71 (47%)
 Frame = +2

Query: 98  RVYVGGLVEGIKKEDLEREFE*IWKTKLSLGSTKSPRFRFHRI*ELAGGGRCGSAMNGTE 277
           +VYVGGL      ++LE  F+   + +    + + P F F    ++        A++G+ 
Sbjct: 4   KVYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSR 63

Query: 278 MLGATLKVEIS 310
           + G   +VE+S
Sbjct: 64  ICGVRARVELS 74


>Z99279-4|CAB16494.1|  121|Caenorhabditis elegans Hypothetical
           protein Y57G11A.5 protein.
          Length = 121

 Score = 38.3 bits (85), Expect = 0.003
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +3

Query: 168 GKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           G + S+W+A  PPGFAF+ F+    A DAV
Sbjct: 52  GPIKSIWMAKRPPGFAFVTFKRTVHAFDAV 81


>AL132904-14|CAC35847.2|  258|Caenorhabditis elegans Hypothetical
           protein Y111B2A.18 protein.
          Length = 258

 Score = 33.9 bits (74), Expect = 0.059
 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +3

Query: 159 NKYGKLNSVWVALNP-PGFAFIEFENLQEAEDAV 257
           +KYG++  V +     P FAF+EFE+ ++AEDAV
Sbjct: 30  HKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAV 63


>AF242767-1|AAG36874.1|  258|Caenorhabditis elegans SF2 protein.
          Length = 258

 Score = 33.9 bits (74), Expect = 0.059
 Identities = 16/34 (47%), Positives = 24/34 (70%), Gaps = 1/34 (2%)
 Frame = +3

Query: 159 NKYGKLNSVWVALNP-PGFAFIEFENLQEAEDAV 257
           +KYG++  V +     P FAF+EFE+ ++AEDAV
Sbjct: 30  HKYGRIKYVDIKSGRGPAFAFVEFEDHRDAEDAV 63


>Z81106-2|CAB03220.2|  468|Caenorhabditis elegans Hypothetical
           protein R06C1.3 protein.
          Length = 468

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 6/72 (8%)
 Frame = -2

Query: 285 PNISVPFIALPHLPPPASSQIL*KRNLGDL------VLPKLSLVFHIYSNSRSRSSFLIP 124
           P  + P + L HLPPP  S +    +  DL      +L   S+V  + + + S   F+ P
Sbjct: 290 PTEAPPPVNLDHLPPPDMSILSIDDDDDDLPPPPPPLLMNTSIVHQLPAEAPSTIQFVEP 349

Query: 123 STRPPTYTRVPP 88
           S  PPT    PP
Sbjct: 350 SAAPPTNIPPPP 361


>U28738-11|AAK68399.3|  166|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform b protein.
          Length = 166

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 14/30 (46%), Positives = 23/30 (76%)
 Frame = +3

Query: 165 YGKLNSVWVALNPPGFAFIEFENLQEAEDA 254
           YGK+N++ +     GFAF++FE+ ++AEDA
Sbjct: 25  YGKINNISMKY---GFAFVDFEDSRDAEDA 51


>U28738-10|AAK72066.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform d protein.
          Length = 208

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 14/30 (46%), Positives = 23/30 (76%)
 Frame = +3

Query: 165 YGKLNSVWVALNPPGFAFIEFENLQEAEDA 254
           YGK+N++ +     GFAF++FE+ ++AEDA
Sbjct: 25  YGKINNISMKY---GFAFVDFEDSRDAEDA 51


>U28738-9|AAA68314.3|  208|Caenorhabditis elegans Sr protein
           (splicing factor) protein5, isoform a protein.
          Length = 208

 Score = 32.3 bits (70), Expect = 0.18
 Identities = 14/30 (46%), Positives = 23/30 (76%)
 Frame = +3

Query: 165 YGKLNSVWVALNPPGFAFIEFENLQEAEDA 254
           YGK+N++ +     GFAF++FE+ ++AEDA
Sbjct: 25  YGKINNISMKY---GFAFVDFEDSRDAEDA 51


>Z66521-4|CAD59160.1|  150|Caenorhabditis elegans Hypothetical
           protein W02B12.3c protein.
          Length = 150

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +3

Query: 114 VSSRESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           ++SR S + I +     YG++  V   L   GF F+EF++ ++AEDAV
Sbjct: 10  LTSRVSEKDIEHFFRG-YGQIRDV---LLKNGFGFVEFDDKRDAEDAV 53


>Z66521-3|CAD59159.1|  148|Caenorhabditis elegans Hypothetical
           protein W02B12.3b protein.
          Length = 148

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +3

Query: 114 VSSRESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           ++SR S + I +     YG++  V   L   GF F+EF++ ++AEDAV
Sbjct: 10  LTSRVSEKDIEHFFRG-YGQIRDV---LLKNGFGFVEFDDKRDAEDAV 53


>Z66521-2|CAA91395.1|  312|Caenorhabditis elegans Hypothetical
           protein W02B12.3a protein.
          Length = 312

 Score = 30.3 bits (65), Expect = 0.73
 Identities = 18/48 (37%), Positives = 29/48 (60%)
 Frame = +3

Query: 114 VSSRESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           ++SR S + I +     YG++  V   L   GF F+EF++ ++AEDAV
Sbjct: 10  LTSRVSEKDIEHFFRG-YGQIRDV---LLKNGFGFVEFDDKRDAEDAV 53


>Z81541-6|CAB04413.2|  326|Caenorhabditis elegans Hypothetical
           protein F48F5.4 protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 178 FSFPYLFELAFEIFLLDSLDETADVHASTTRTH 80
           +S  Y+F +A++I +L      A+VH  T + H
Sbjct: 133 YSVHYIFPIAYQILMLIPSSSNAEVHIETLQLH 165


>Z66521-8|CAA91394.1|  281|Caenorhabditis elegans Hypothetical
           protein W02B12.2 protein.
          Length = 281

 Score = 29.1 bits (62), Expect = 1.7
 Identities = 13/31 (41%), Positives = 22/31 (70%)
 Frame = +3

Query: 165 YGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
           YGKL+ V   +   GF F++F++ ++A+DAV
Sbjct: 25  YGKLSDV---IMKNGFGFVDFQDQRDADDAV 52


>AF040644-4|AAB94968.2|  324|Caenorhabditis elegans Serpentine
           receptor, class d (delta)protein 69 protein.
          Length = 324

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -1

Query: 178 FSFPYLFELAFEIFLLDSLDETADVHASTTRTH 80
           +S  YLF +AF+I +L       +VH+ T + H
Sbjct: 133 YSLHYLFPIAFQILMLIPPSNHMEVHSETLQFH 165


>U88175-6|AAB42283.1|  234|Caenorhabditis elegans Hypothetical
           protein F21F3.6 protein.
          Length = 234

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = -2

Query: 138 SFLIPSTRPPTYTRVPPEL 82
           +F +  TRPP YTR+P ++
Sbjct: 210 AFAVDFTRPPPYTRLPTDV 228


>U55857-6|AAA98032.2|  206|Caenorhabditis elegans Rnp (rrm rna
           binding domain) containingprotein 2 protein.
          Length = 206

 Score = 26.6 bits (56), Expect = 9.0
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 93  VLACTSAVSSRESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFE 230
           +L CT+   S  +  ++     N++  L  + +  N PG AF+EF+
Sbjct: 133 ILFCTNLPDSATA--EMLEIMFNQFAGLKDIRMVPNRPGIAFVEFD 176


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,260,501
Number of Sequences: 27780
Number of extensions: 144231
Number of successful extensions: 522
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 494
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)