Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= e40h0576
(472 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At2g24590.1 68415.m02936 splicing factor, putative similar to to... 45 3e-05
At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-l... 44 5e-05
At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-l... 43 9e-05
At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-l... 43 9e-05
At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR... 36 0.018
At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR... 36 0.018
At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing ... 35 0.024
At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.024
At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.024
At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR... 35 0.024
At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)... 35 0.032
At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative stro... 32 0.17
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 31 0.30
At3g61130.1 68416.m06841 glycosyl transferase family 8 protein c... 31 0.52
At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing ... 29 1.2
At5g05090.1 68418.m00540 myb family transcription factor contain... 29 1.2
At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RS... 29 1.2
At1g06720.1 68414.m00714 expressed protein contains Pfam domain,... 28 2.8
At5g04280.1 68418.m00421 glycine-rich RNA-binding protein 28 3.7
At4g30920.1 68417.m04390 cytosol aminopeptidase family protein c... 28 3.7
At2g46610.1 68415.m05814 arginine/serine-rich splicing factor, p... 28 3.7
At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing ... 28 3.7
At1g72270.1 68414.m08355 expressed protein 28 3.7
At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RS... 27 4.8
At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RS... 27 4.8
At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)... 27 4.8
At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RS... 27 4.8
At4g12750.1 68417.m02002 expressed protein 27 4.8
At2g46610.2 68415.m05813 arginine/serine-rich splicing factor, p... 27 4.8
At5g61550.1 68418.m07724 protein kinase family protein contains ... 27 6.4
At5g27640.1 68418.m03311 eukaryotic translation initiation facto... 27 6.4
At1g77300.1 68414.m09002 SET domain-containing protein similar t... 27 6.4
At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)... 27 6.4
At2g46480.1 68415.m05785 glycosyl transferase family 8 protein c... 27 8.5
At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family pr... 27 8.5
At2g22530.1 68415.m02672 phosphatidylinositolglycan-related simi... 27 8.5
>At2g24590.1 68415.m02936 splicing factor, putative similar to to
RSZp22 protein [Arabidopsis thaliana]
gi|2582645|emb|CAA05352
Length = 196
Score = 44.8 bits (101), Expect = 3e-05
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = +3
Query: 165 YGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
+G + SVWVA PPG+AF++FE+ ++A DA+
Sbjct: 25 FGVIRSVWVARRPPGYAFLDFEDSRDARDAI 55
>At4g31580.1 68417.m04485 splicing factor RSZp22 (RSZP22) / 9G8-like
SR protein (SRZ22) identical to RSZp22 protein
[Arabidopsis thaliana] gi|2582645|emb|CAA05352, 9G8-like
SR protein [Arabidopsis thaliana] GI:3435094; contains
Pfam profiles PF00076: RNA recognition motif. (a.k.a.
RRM, RBD, or RNP domain) and PF00098: Zinc knuckle;
identical to cDNA 9G8-like SR protein (SRZ22) GI:3435093
Length = 200
Score = 44.0 bits (99), Expect = 5e-05
Identities = 16/31 (51%), Positives = 25/31 (80%)
Frame = +3
Query: 165 YGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
+G + SVWVA PPG+AF++FE+ ++A DA+
Sbjct: 25 FGVVRSVWVARRPPGYAFLDFEDPRDARDAI 55
>At1g23860.2 68414.m03010 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 43.2 bits (97), Expect = 9e-05
Identities = 16/32 (50%), Positives = 26/32 (81%)
Frame = +3
Query: 165 YGKLNSVWVALNPPGFAFIEFENLQEAEDAVA 260
+G L +VWVA PPG+AF+EF++ ++A DA++
Sbjct: 25 FGVLRNVWVARRPPGYAFLEFDDERDALDAIS 56
>At1g23860.1 68414.m03009 splicing factor RSZp21 (RSZP21) / 9G8-like
SR protein (SRZ21) nearly identical to 9G8-like splicing
factor SRZ21 [Arabidopsis thaliana] GI:3435096, RSZp21
protein [Arabidopsis thaliana] GI:2582643
Length = 187
Score = 43.2 bits (97), Expect = 9e-05
Identities = 16/32 (50%), Positives = 26/32 (81%)
Frame = +3
Query: 165 YGKLNSVWVALNPPGFAFIEFENLQEAEDAVA 260
+G L +VWVA PPG+AF+EF++ ++A DA++
Sbjct: 25 FGVLRNVWVARRPPGYAFLEFDDERDALDAIS 56
>At4g02430.2 68417.m00330 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 278
Score = 35.5 bits (78), Expect = 0.018
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Frame = +3
Query: 159 NKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDAV 257
+KYG + + + + PPG+AF+EFE+ ++A+DA+
Sbjct: 28 SKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
>At4g02430.1 68417.m00329 pre-mRNA splicing factor, putative / SR1
protein, putative strong similarity to SP|O22315
Pre-mRNA splicing factor SF2 (SR1 protein) {Arabidopsis
thaliana}; cDNA NCBI_gi:15810292 supports a truncated
version while protein evidence supports a longer model.
Length = 178
Score = 35.5 bits (78), Expect = 0.018
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Frame = +3
Query: 159 NKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDAV 257
+KYG + + + + PPG+AF+EFE+ ++A+DA+
Sbjct: 28 SKYGPVVQIDLKIPPRPPGYAFVEFEDARDADDAI 62
>At2g16940.1 68415.m01952 RNA recognition motif (RRM)-containing
protein
Length = 561
Score = 35.1 bits (77), Expect = 0.024
Identities = 14/29 (48%), Positives = 20/29 (68%)
Frame = +3
Query: 159 NKYGKLNSVWVALNPPGFAFIEFENLQEA 245
+K+GKLN ++V N GF ++ FEN Q A
Sbjct: 496 SKFGKLNHIFVDKNSVGFVYLRFENAQAA 524
>At1g02840.3 68414.m00246 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.1 bits (77), Expect = 0.024
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Frame = +3
Query: 159 NKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDAV 257
+KYG + + + + PPG+AF+EF++ ++AEDA+
Sbjct: 28 SKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
>At1g02840.2 68414.m00244 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 285
Score = 35.1 bits (77), Expect = 0.024
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Frame = +3
Query: 159 NKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDAV 257
+KYG + + + + PPG+AF+EF++ ++AEDA+
Sbjct: 28 SKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
>At1g02840.1 68414.m00245 pre-mRNA splicing factor SF2 (SF2) / SR1
protein identical to SP|O22315 Pre-mRNA splicing factor
SF2 (SR1 protein) {Arabidopsis thaliana}
Length = 303
Score = 35.1 bits (77), Expect = 0.024
Identities = 14/35 (40%), Positives = 26/35 (74%), Gaps = 2/35 (5%)
Frame = +3
Query: 159 NKYGKLNSVWVAL--NPPGFAFIEFENLQEAEDAV 257
+KYG + + + + PPG+AF+EF++ ++AEDA+
Sbjct: 28 SKYGPVVQIDLKVPPRPPGYAFVEFDDARDAEDAI 62
>At1g09140.1 68414.m01018 SF2/ASF-like splicing modulator (SRP30)
nearly identical to SF2/ASF-like splicing modulator
Srp30 [Arabidopsis thaliana] GI:4775270
Length = 268
Score = 34.7 bits (76), Expect = 0.032
Identities = 14/34 (41%), Positives = 25/34 (73%), Gaps = 2/34 (5%)
Frame = +3
Query: 162 KYGKLNSVWVAL--NPPGFAFIEFENLQEAEDAV 257
KYG + + + + PPG+AF+EFE+ ++A+DA+
Sbjct: 29 KYGPIVDIDLKIPPRPPGYAFVEFEDPRDADDAI 62
>At3g49430.1 68416.m05403 pre-mRNA splicing factor, putative strong
similarity to SP|O22315 Pre-mRNA splicing factor SF2
(SR1 protein) {Arabidopsis thaliana}
Length = 300
Score = 32.3 bits (70), Expect = 0.17
Identities = 13/34 (38%), Positives = 24/34 (70%), Gaps = 2/34 (5%)
Frame = +3
Query: 162 KYGKLNSVWVAL--NPPGFAFIEFENLQEAEDAV 257
KYG++ + + + PP + F+EFE+ ++AEDA+
Sbjct: 29 KYGRIVDIELKVPPRPPCYCFVEFEHSRDAEDAI 62
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 31.5 bits (68), Expect = 0.30
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +3
Query: 159 NKYGKLNSVWVALNPPGFAFIEFENLQEAEDAVAR*MVLR 278
+KYG +N ++V N GF ++ F+++ EA A R M +R
Sbjct: 466 SKYGPVNHIYVDKNSAGFVYLRFQSV-EAAAAAQRAMHMR 504
>At3g61130.1 68416.m06841 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8
Length = 673
Score = 30.7 bits (66), Expect = 0.52
Identities = 15/52 (28%), Positives = 32/52 (61%), Gaps = 2/52 (3%)
Frame = +3
Query: 93 VLACTSAVSSRESRRKISNASSNK--YGKLNSVWVALNPPGFAFIEFENLQE 242
V+ ++ +++++ + + + ++K +G +N +W LNPPG A I EN+ E
Sbjct: 379 VVVNSTIMNAKDPSKHVFHLVTDKLNFGAMN-MWFLLNPPGKATIHVENVDE 429
>At5g58130.1 68418.m07273 RNA recognition motif (RRM)-containing
protein
Length = 748
Score = 29.5 bits (63), Expect = 1.2
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +2
Query: 83 SSGGTRVYVGGLVEGIKKEDLEREF 157
S GG R++VGGL E + ++DL + F
Sbjct: 6 SGGGVRLHVGGLGESVGRDDLLKIF 30
>At5g05090.1 68418.m00540 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 266
Score = 29.5 bits (63), Expect = 1.2
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = -2
Query: 198 LVLPKLSLVFHIYSNSRSRSSFLIPSTRPP 109
L+ P L++ F ++ N+ S S +P T PP
Sbjct: 29 LITPDLAIAFDLHRNNNSNSGQPLPQTTPP 58
>At3g61860.1 68416.m06947 arginine/serine-rich splicing factor RSP31
(RSP31) identical to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 264
Score = 29.5 bits (63), Expect = 1.2
Identities = 15/46 (32%), Positives = 29/46 (63%)
Frame = +3
Query: 126 ESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFENLQEAEDAVAR 263
E+R+ +KYG+++ V + G+AF+ FE+ ++AEDA+ +
Sbjct: 12 ETRQSDLERLFDKYGRVDRVDMK---SGYAFVYFEDERDAEDAIRK 54
>At1g06720.1 68414.m00714 expressed protein contains Pfam domain,
PF04950: Protein of unknown function (DUF663)
Length = 1147
Score = 28.3 bits (60), Expect = 2.8
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 111 AVSSRESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFENL 236
A+ R R ++ + L S W L PP F+ F+NL
Sbjct: 828 AIEDRNGRHRMLKYTPEHMHCLASFWGPLVPPNTGFVAFQNL 869
>At5g04280.1 68418.m00421 glycine-rich RNA-binding protein
Length = 310
Score = 27.9 bits (59), Expect = 3.7
Identities = 11/22 (50%), Positives = 15/22 (68%)
Frame = +2
Query: 92 GTRVYVGGLVEGIKKEDLEREF 157
G+R++VGGL + DLER F
Sbjct: 6 GSRIFVGGLSPEVTDRDLERAF 27
>At4g30920.1 68417.m04390 cytosol aminopeptidase family protein
contains Pfam profiles: PF00883 cytosol aminopeptidase
family catalytic domain, PF02789: cytosol aminopeptidase
family N-terminal domain
Length = 583
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/66 (31%), Positives = 28/66 (42%)
Frame = -1
Query: 271 TIHRATASSASCKFSNSMKAKPGGFSATQTEFSFPYLFELAFEIFLLDSLDETADVHAST 92
T+ + ASS+S S + P S+ F FP LAF + L S A H +
Sbjct: 4 TLVTSFASSSSRFHFRSFSSSPSSLSSCFVRFQFPSRLRLAFAVTPLYS-SSRAMAHTIS 62
Query: 91 TRTHGL 74
T GL
Sbjct: 63 HATLGL 68
>At2g46610.1 68415.m05814 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 250
Score = 27.9 bits (59), Expect = 3.7
Identities = 13/35 (37%), Positives = 24/35 (68%)
Frame = +3
Query: 159 NKYGKLNSVWVALNPPGFAFIEFENLQEAEDAVAR 263
+K+G++ V + G+AF+ FE+ ++AEDA+ R
Sbjct: 23 SKFGRVKRVDMK---SGYAFVYFEDERDAEDAIRR 54
>At2g43410.1 68415.m05395 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 1056
Score = 27.9 bits (59), Expect = 3.7
Identities = 21/71 (29%), Positives = 34/71 (47%)
Frame = +2
Query: 101 VYVGGLVEGIKKEDLEREFE*IWKTKLSLGSTKSPRFRFHRI*ELAGGGRCGSAMNGTEM 280
++VGG+ + K+DLE EF K + + + F E+ + S MNG M
Sbjct: 252 LWVGGIGPNVSKDDLEEEFSKFGKIE-DFRFLRERKTAFIDYYEMDDALQAKS-MNGKPM 309
Query: 281 LGATLKVEISR 313
G+ L+V+ R
Sbjct: 310 GGSFLRVDFLR 320
>At1g72270.1 68414.m08355 expressed protein
Length = 2777
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/32 (43%), Positives = 17/32 (53%)
Frame = +2
Query: 221 RI*ELAGGGRCGSAMNGTEMLGATLKVEISRK 316
R+ L G G NGT +L ATLK+ RK
Sbjct: 2406 RLYTLLGDGLVSMQENGTSILSATLKISHKRK 2437
>At5g52040.2 68418.m06459 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 357
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 162 KYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
KYGK+ V + GFAF+ E+ ++AEDA+
Sbjct: 24 KYGKVERVDMKA---GFAFVYMEDERDAEDAI 52
>At5g52040.1 68418.m06458 arginine/serine-rich splicing factor RSP41
(RSP41) nearly identical to SP|P92966
Arginine/serine-rich splicing factor RSP41 {Arabidopsis
thaliana}
Length = 356
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 162 KYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
KYGK+ V + GFAF+ E+ ++AEDA+
Sbjct: 24 KYGKVERVDMKA---GFAFVYMEDERDAEDAI 52
>At5g42990.1 68418.m05243 ubiquitin-conjugating enzyme 18 (UBC18)
E2; identical to gi:2801448
Length = 161
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 117 SSRESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFENLQE 242
SS SR+ +S + N+ K S W P GF +NLQ+
Sbjct: 4 SSSPSRKALSKIACNRLQKELSEWQVNPPTGFKHRVTDNLQK 45
>At4g25500.1 68417.m03673 arginine/serine-rich splicing factor RSP40
(RSP40) identical to SP|P92965 Arginine/serine-rich
splicing factor RSP40 {Arabidopsis thaliana}
Length = 350
Score = 27.5 bits (58), Expect = 4.8
Identities = 14/32 (43%), Positives = 21/32 (65%)
Frame = +3
Query: 162 KYGKLNSVWVALNPPGFAFIEFENLQEAEDAV 257
KYGK+ V + GFAF+ E+ ++AEDA+
Sbjct: 24 KYGKVERVDMKA---GFAFVYMEDERDAEDAI 52
>At4g12750.1 68417.m02002 expressed protein
Length = 1108
Score = 27.5 bits (58), Expect = 4.8
Identities = 13/35 (37%), Positives = 17/35 (48%)
Frame = +3
Query: 87 RVVLACTSAVSSRESRRKISNASSNKYGKLNSVWV 191
R V C ++ S S KI +SSN+Y WV
Sbjct: 667 RAVADCAPSIYSHGSGGKIKRSSSNQYSYPRGSWV 701
>At2g46610.2 68415.m05813 arginine/serine-rich splicing factor,
putative similar to SP|P92964 Arginine/serine-rich
splicing factor RSP31 {Arabidopsis thaliana}
Length = 224
Score = 27.5 bits (58), Expect = 4.8
Identities = 10/19 (52%), Positives = 16/19 (84%)
Frame = +3
Query: 207 GFAFIEFENLQEAEDAVAR 263
G+AF+ FE+ ++AEDA+ R
Sbjct: 10 GYAFVYFEDERDAEDAIRR 28
>At5g61550.1 68418.m07724 protein kinase family protein contains
Pfam profile: PF00069 Eukaryotic protein kinase domain;
protein kinase 1, PnPK1, Populus nigra, EMBL:AB041503
Length = 845
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/43 (30%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +3
Query: 96 LACTSAVSSRESRRKI-SNASSNKYGKLNSVWVALNPPGFAFI 221
++ TS E RR++ S++SSN + +N W A+ P ++++
Sbjct: 293 MSWTSKWRDHEDRREMRSSSSSNNHDLVNMDWGAVVPENYSWV 335
>At5g27640.1 68418.m03311 eukaryotic translation initiation factor 3
subunit 9 / eIF-3 eta / eIF3b (TIF3B1) nearly identical
to SP|Q9C5Z1 Eukaryotic translation initiation factor 3
subunit 9 (eIF-3 eta) (eIF3 p110) (eIF3b) {Arabidopsis
thaliana}
Length = 712
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 5/33 (15%)
Frame = +3
Query: 171 KLNSVWVALNPP-----GFAFIEFENLQEAEDA 254
K N +W+ ++P G+ FIEF QEA++A
Sbjct: 89 KENGLWMPVDPDTKMTLGYCFIEFNTPQEAQNA 121
>At1g77300.1 68414.m09002 SET domain-containing protein similar to
huntingtin interacting protein 1 [Homo sapiens]
GI:12697196; contains Pfam profile PF00856: SET domain
Length = 1759
Score = 27.1 bits (57), Expect = 6.4
Identities = 13/33 (39%), Positives = 19/33 (57%)
Frame = -2
Query: 303 STFKVAPNISVPFIALPHLPPPASSQIL*KRNL 205
+T+ VAP + PF P LPP + + KRN+
Sbjct: 1649 TTWSVAPGM--PFYPFPPLPPVSHGEFFAKRNV 1679
>At1g45050.1 68414.m05165 ubiquitin-conjugating enzyme 15 (UBC15)
E2; identical to ubiquitin-conjugating enzyme 15
GI:2801442 from [Arabidopsis thaliana]
Length = 161
Score = 27.1 bits (57), Expect = 6.4
Identities = 15/42 (35%), Positives = 21/42 (50%)
Frame = +3
Query: 117 SSRESRRKISNASSNKYGKLNSVWVALNPPGFAFIEFENLQE 242
SS SR+ +S + N+ K S W P GF +NLQ+
Sbjct: 4 SSAPSRKALSKIACNRLQKELSEWQLNPPTGFRHKVTDNLQK 45
>At2g46480.1 68415.m05785 glycosyl transferase family 8 protein
contains Pfam profile: PF01501 glycosyl transferase
family 8;
Length = 528
Score = 26.6 bits (56), Expect = 8.5
Identities = 13/52 (25%), Positives = 31/52 (59%), Gaps = 2/52 (3%)
Frame = +3
Query: 93 VLACTSAVSSRESRRKISNASSNK--YGKLNSVWVALNPPGFAFIEFENLQE 242
V+ ++ +++++ R + + ++K +G + S+W LNPPG A I + ++
Sbjct: 256 VVVNSTVMNAQDPSRHVFHLVTDKLNFGAM-SMWFLLNPPGEATIHVQRFED 306
>At2g31210.1 68415.m03811 basic helix-loop-helix (bHLH) family
protein contains Pfam profile: PF00010 helix-loop-helix
DNA-binding domain; PMID: 12679534
Length = 428
Score = 26.6 bits (56), Expect = 8.5
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -1
Query: 244 ASCKFSNSMKAKPGGFSATQTEFSFPYLFE 155
+SC NSM GGF A +T F+ + F+
Sbjct: 5 SSCFDPNSMVDNNGGFCAAETTFTVSHQFQ 34
>At2g22530.1 68415.m02672 phosphatidylinositolglycan-related similar
to Pig-o [Mus musculus] GI:8099973
Length = 897
Score = 26.6 bits (56), Expect = 8.5
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = -2
Query: 183 LSLVFHIYSNSRSRSSFLIPSTRPPTYTRVP 91
LSLV +I +N R+ S+ I + R T RVP
Sbjct: 829 LSLVMYIGANLRNHSNSTISTHRETTKARVP 859
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,909,348
Number of Sequences: 28952
Number of extensions: 142799
Number of successful extensions: 539
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 539
length of database: 12,070,560
effective HSP length: 75
effective length of database: 9,899,160
effective search space used: 801831960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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