Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= e40h0575
         (550 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1270 + 35886571-35886573,35886676-35886708,35887073-358872...    30   1.1  
04_04_1343 - 32781101-32781364,32782470-32782791,32784346-32784740     30   1.4  
12_02_0843 + 23593765-23593961,23594474-23594537                       27   9.9  

>01_06_1270 +
           35886571-35886573,35886676-35886708,35887073-35887235,
           35887307-35887437,35887593-35887730,35887814-35887912,
           35888103-35888339
          Length = 267

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +1

Query: 16  CQPEELKRGVICMPLQYIYRKRTALMTCHVHLCPSLFIIDMIYLITI 156
           C+  E+++ V   P  YIYR +  L TCH  L  SL I   ++ +T+
Sbjct: 148 CKDPEMRKQVRSNP--YIYRGKLPLKTCHELLMVSLDIEKNLHEVTL 192


>04_04_1343 - 32781101-32781364,32782470-32782791,32784346-32784740
          Length = 326

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 11/18 (61%), Positives = 14/18 (77%)
 Frame = +2

Query: 179 SLVFFFNQARDSWMKPIP 232
           SLVFFFN   D W++P+P
Sbjct: 263 SLVFFFNVHGDRWVEPLP 280


>12_02_0843 + 23593765-23593961,23594474-23594537
          Length = 86

 Score = 27.1 bits (57), Expect = 9.9
 Identities = 15/42 (35%), Positives = 19/42 (45%)
 Frame = +3

Query: 33  EKRSNMHASAIHISKTDCTNDLPCSFVS*FIHH*HDLFNNNK 158
           E       S IH+ K  CT  L CS+ S  +   +D  N NK
Sbjct: 14  ETAQETEGSRIHLQKRHCTILLLCSWTSLELKTPNDFKNKNK 55


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,278,804
Number of Sequences: 37544
Number of extensions: 210821
Number of successful extensions: 420
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 415
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 420
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1233951264
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)